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AT1G63130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 68218 Blast hits to 15140 proteins in 318 species: Archae - 7; Bacteria - 75; Metazoa - 1255; Fungi - 1382; Plants - 62771; Viruses - 0; Other Eukaryotes - 2728 (source: NCBI BLink).
Protein Annotations
BioGrid:27838eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC010795
EMBL:AY128387EMBL:BT000125EMBL:CP002684EnsemblPlants:AT1G63130
EnsemblPlants:AT1G63130.1entrez:842617Gene3D:1.25.40.10GeneID:842617
Genevisible:Q9CAN0GO:GO:0005739Gramene:AT1G63130.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF884HOGENOM:HOG000015176InParanoid:Q9CAN0IntAct:Q9CAN0
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G63130OMA:YRKISIN
PaxDb:Q9CAN0Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:Q9CAN0Pfscan:PS51375PhylomeDB:Q9CAN0PIR:G96656
PRIDE:Q9CAN0PRO:PR:Q9CAN0PROSITE:PS51375ProteinModelPortal:Q9CAN0
Proteomes:UP000006548RefSeq:NP_176501.1SMR:Q9CAN0STRING:3702.AT1G63130.1
SUPFAM:SSF81901TAIR:AT1G63130TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.36174UniProt:Q9CAN0
Coordinates (TAIR10) chr1:+:23412854..23414746
Molecular Weight (calculated) 70973.60 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.04
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)