suba logo
AT1G62990.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOTTED-like homeobox of Arabidopsis thaliana 7
Curator
Summary (TAIR10)
Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.
Computational
Description (TAIR10)
KNOTTED-like homeobox of Arabidopsis thaliana 7 (KNAT7); CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5187 Blast hits to 5186 proteins in 324 species: Archae - 0; Bacteria - 0; Metazoa - 1947; Fungi - 303; Plants - 2774; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
BioGrid:27823eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC011000EMBL:AF308451EMBL:AK118326EMBL:AY084398
EMBL:BT026059EMBL:CP002684EnsemblPlants:AT1G62990EnsemblPlants:AT1G62990.1entrez:842602Gene3D:1.10.10.60GeneID:842602
Genevisible:Q9FPQ8GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0010089GO:GO:0010192GO:GO:0045892
GO:GO:2000652Gramene:AT1G62990.1hmmpanther:PTHR11850hmmpanther:PTHR11850:SF74HOGENOM:HOG000272741InParanoid:Q9FPQ8IntAct:Q9FPQ8
InterPro:IPR001356InterPro:IPR005539InterPro:IPR005540InterPro:IPR005541InterPro:IPR008422InterPro:IPR009057KEGG:ath:AT1G62990
OMA:HERQELDPaxDb:Q9FPQ8Pfam:PF03790Pfam:PF03791Pfam:PF05920Pfam:Q9FPQ8Pfscan:PS50071
Pfscan:PS51213PhylomeDB:Q9FPQ8PIR:A96655PRIDE:Q9FPQ8PRO:PR:Q9FPQ8PROSITE:PS00027PROSITE:PS50071
PROSITE:PS51213ProteinModelPortal:Q9FPQ8Proteomes:UP000006548RefSeq:NP_564805.1SMART:SM00389SMART:SM01255SMART:SM01256
SMR:Q9FPQ8STRING:3702.AT1G62990.1SUPFAM:SSF46689TAIR:AT1G62990tair10-symbols:IXR11tair10-symbols:KNAT7UniGene:At.70104
UniProt:Q9FPQ8
Coordinates (TAIR10) chr1:+:23337468..23340348
Molecular Weight (calculated) 32910.00 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.61
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)