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AT1G62980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A18
Curator
Summary (TAIR10)
Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A18 (EXPA18); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A7 (TAIR:AT1G12560.1); Has 2180 Blast hits to 2177 proteins in 164 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 2093; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUG0eggNOG:ENOG41106X1EMBL:AK227678EnsemblPlants:AT1G62980EnsemblPlants:AT1G62980.1entrez:842601ExpressionAtlas:Q0WT83
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:842601GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
Gramene:AT1G62980.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF2InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009KEGG:ath:AT1G62980OMA:WINMSHNPaxDb:Q0WT83Pfam:PF01357Pfam:PF03330Pfam:Q9LQ07
Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q0WT83PRIDE:Q0WT83PRINTS:PR01225PRINTS:PR01226PROSITE:PS50842
PROSITE:PS50843ProteinModelPortal:Q0WT83RefSeq:NP_176486.1SMART:SM00837SMR:Q0WT83STRING:3702.AT1G62980.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT1G62980tair10-symbols:ATEXP18tair10-symbols:ATEXPA18tair10-symbols:ATHEXP ALPHA 1.25tair10-symbols:EXP18tair10-symbols:EXPA18
TMHMM:TMhelixUniGene:At.70234UniProt:Q0WT83UniProt:Q9LQ07
Coordinates (TAIR10) chr1:+:23331728..23332934
Molecular Weight (calculated) 27871.20 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.14
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQNLYRKCL VILSMMAMIG TSMATYAGTP WRTASATFYG DDTGSATMGG ACGYGNMYDS GYGVATTALS TALFNEGYAC GQCFQLKCVS SPNCYYGSPA
101: TVVTATNICP PNYGQASNNG GWCNPPRVHF DLTKPAFMKI ANWKAGIIPV SYRRVACKKI GGIRFKFEGN GYWLLVYVMN VGGPGDIKTM AVKGSRTGWI
201: NMSHNWGASY QAFSSLYGQS LSFRLTSYTT RQTIYAYNAA PASWSAGKTY QSKANFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)