AT1G62950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : leucine-rich repeat transmembrane protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G12460.1); Has 173083 Blast hits to 114691 proteins in 4339 species: Archae - 116; Bacteria - 15745; Metazoa - 52877; Fungi - 7816; Plants - 76612; Viruses - 257; Other Eukaryotes - 19660 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23315294..23318061 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98077.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 890 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQIGKLIWVI MFIFVHIIIT SSRSFSDSII TEREILLQFK DNINDDPYNS LASWVSNADL CNSFNGVSCN QEGFVEKIVL WNTSLAGTLT PALSGLTSLR 101: VLTLFGNRIT GNLPLDYLKL QTLWKINVSS NALSGLVPEF IGDLPNLRFL DLSKNAFFGE IPNSLFKFCY KTKFVSLSHN NLSGSIPESI VNCNNLIGFD 201: FSYNGITGLL PRICDIPVLE FVSVRRNLLS GDVFEEISKC KRLSHVDIGS NSFDGVASFE VIGFKNLTYF NVSGNRFRGE IGEIVDCSES LEFLDASSNE 301: LTGNVPSGIT GCKSLKLLDL ESNRLNGSVP VGMGKMEKLS VIRLGDNFID GKLPLELGNL EYLQVLNLHN LNLVGEIPED LSNCRLLLEL DVSGNGLEGE 401: IPKNLLNLTN LEILDLHRNR ISGNIPPNLG SLSRIQFLDL SENLLSGPIP SSLENLKRLT HFNVSYNNLS GIIPKIQASG ASSFSNNPFL CGDPLETPCN 501: ALRTGSRSRK TKALSTSVII VIIAAAAILV GICLVLVLNL RARKRRKKRE EEIVTFDTTT PTQASTESGN GGVTFGKLVL FSKSLPSKYE DWEAGTKALL 601: DKDNIIGIGS IGAVYRASFE GGVSIAVKKL ETLGRIRNQE EFEQEIGRLG SLSHPNLASF QGYYFSSTMQ LILSEFVTNG SLYDNLHPRV SHRTSSSSSS 701: HGNTELNWHR RFQIAVGTAK ALSFLHNDCK PAILHLNVKS TNILLDERYE AKLSDYGLEK FLPVLNSSGL TKFHNAVGYI APELAQSLRV SDKCDVYSYG 801: VVLLELVTGR KPVESPSENE VVILRDHVRN LLETGSASDC FDRRLRGFEE NELIQVMKLG LICTTENPLK RPSIAEVVQV LELIRNGMES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)