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AT1G62790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 319 Blast hits to 315 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4UAeggNOG:ENOG410YZ3JEMBL:AK229732EMBL:BT011764EMBL:BT012377EMBL:CP002684EnsemblPlants:AT1G62790
EnsemblPlants:AT1G62790.1entrez:842578ExpressionAtlas:Q6NLF7GeneID:842578GO:GO:0031225Gramene:AT1G62790.1HOGENOM:HOG000242035
InterPro:IPR016140KEGG:ath:AT1G62790OMA:SACTAKGPfam:PF14368PhylomeDB:Q6NLF7Proteomes:UP000006548RefSeq:NP_176467.1
SMR:Q6NLF7SUPFAM:SSF47699TAIR:AT1G62790TMHMM:TMhelixUniGene:At.24097UniGene:At.48335UniProt:Q6NLF7
Coordinates (TAIR10) chr1:+:23252369..23253481
Molecular Weight (calculated) 15712.30 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.31
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKTMMIFAA AMTVMALLLV PTIEAQTECV SKLVPCFNDL NTTTTPVKEC CDSIKEAVEK ELTCLCTIYT SPGLLAQFNV TTEKALGLSR RCNVTTDLSA
101: CTAKGAPSPK ASLPPPAPAG NTKKDAGAGN KLAGYGVTTV ILSLISSIFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)