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AT1G62780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
DNASU:842577eggNOG:ENOG410IN4ReggNOG:ENOG4111J5NEMBL:AY072395EMBL:BT000176EMBL:CP002684EnsemblPlants:AT1G62780
EnsemblPlants:AT1G62780.1entrez:842577GeneID:842577GO:GO:0009507GO:GO:0009570Gramene:AT1G62780.1hmmpanther:PTHR36333
hmmpanther:PTHR36333:SF1HOGENOM:HOG000006436KEGG:ath:AT1G62780ncoils:CoilOMA:GWDPEGIPhylomeDB:Q8VY70Proteomes:UP000006548
RefSeq:NP_176466.1STRING:3702.AT1G62780.1TAIR:AT1G62780UniGene:At.36223UniProt:Q8VY70
Coordinates (TAIR10) chr1:-:23249349..23251066
Molecular Weight (calculated) 27220.60 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.51
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLSFGIAA AATTVRTIPR FNSRRSKITC EWDPKGVLGP AQTGHIARLE FKRRLERDSE AREAFQKQLR EEKERRQALR QSRVVPDTAA ELIEYFLDTE
101: AQEIEYEIAR LRGRLNDEFF AQIRLEIGQI RFAVTKTADI EDRLIELETL QKALEEGIEA YDKMQNELMT ATNSLTKLLT STDIKTTLLD MVEKNQINRS
201: LLALLDENIA NAYKGNQKEA GDYMEKIRSS VLKYLTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)