suba logo
AT1G62750.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17137349 (2006): mitochondrion
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At1g62750-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At1g62750-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (mitochondrial marker)

At1g62750-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At1g62750-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EFG/EF2 protein
Curator
Summary (TAIR10)
Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.
Computational
Description (TAIR10)
SNOWY COTYLEDON 1 (SCO1); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding; INVOLVED IN: post-embryonic development, chloroplast organization, seed germination; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein (TAIR:AT2G45030.1); Has 79823 Blast hits to 67706 proteins in 7071 species: Archae - 929; Bacteria - 47320; Metazoa - 4453; Fungi - 5428; Plants - 1613; Viruses - 3; Other Eukaryotes - 20077 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1193-MONOMERBioGrid:27794eggNOG:COG0480eggNOG:KOG0465EMBL:AC007190EMBL:AY039936EMBL:AY142646
EMBL:BK005771EMBL:CP002684EnsemblPlants:AT1G62750EnsemblPlants:AT1G62750.1entrez:842573Gene3D:3.30.230.10Gene3D:3.30.70.240
Gene3D:3.40.50.300GeneID:842573Genevisible:Q9SI75GO:GO:0003746GO:GO:0003924GO:GO:0005524GO:GO:0005525
GO:GO:0005739GO:GO:0009507GO:GO:0009570GO:GO:0009658GO:GO:0009791GO:GO:0009845GO:GO:0009941
GO:GO:0032790GO:GO:0048046Gramene:AT1G62750.1HAMAP:MF_00054_BHAMAP:MF_03063hmmpanther:PTHR23115hmmpanther:PTHR23115:SF66
HOGENOM:HOG000231585InParanoid:Q9SI75InterPro:IPR000640InterPro:IPR000795InterPro:IPR004161InterPro:IPR004540InterPro:IPR005225
InterPro:IPR005517InterPro:IPR009000InterPro:IPR009022InterPro:IPR014721InterPro:IPR020568InterPro:IPR027417InterPro:IPR030848
InterPro:IPR031157KEGG:ath:AT1G62750KO:K02355OMA:HHYAEAPPaxDb:Q9SI75Pfam:PF00009Pfam:PF00679
Pfam:PF03144Pfam:PF03764Pfam:PF14492Pfam:Q9SI75Pfscan:PS51722PhylomeDB:Q9SI75PIR:E96652
PRIDE:Q9SI75PRINTS:PR00315PRO:PR:Q9SI75PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:Q9SI75Proteomes:UP000006548
RefSeq:NP_564801.1scanprosite:PS00301SMART:SM00838SMART:SM00889SMR:Q9SI75STRING:3702.AT1G62750.1SUPFAM:SSF50447
SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF54980TAIR:AT1G62750tair10-symbols:ATSCO1tair10-symbols:ATSCO1/CPEF-Gtair10-symbols:SCO1
TIGRfam:TIGR00231TIGRfam:TIGR00484TIGRFAMs:TIGR00231TIGRFAMs:TIGR00484UniGene:At.21185UniGene:At.48334UniPathway:UPA00345
UniProt:Q9SI75
Coordinates (TAIR10) chr1:-:23233622..23236321
Molecular Weight (calculated) 86062.50 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.20
Length 783 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)