suba logo
AT1G62740.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : stress-inducible protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
Protein Annotations
BioGrid:27793eggNOG:ENOG410XTCJeggNOG:KOG0548EMBL:AC007190EMBL:AK228637EMBL:BT005735EMBL:BT015924
EMBL:BT020538EMBL:CP002684EnsemblPlants:AT1G62740EnsemblPlants:AT1G62740.1entrez:842572Gene3D:1.25.40.10GeneID:842572
Genevisible:Q5XEP2GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0046686GO:GO:0051131GO:GO:0051879
GO:GO:0070678Gramene:AT1G62740.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF371HOGENOM:HOG000186562InParanoid:Q5XEP2InterPro:IPR001440
InterPro:IPR006636InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734iPTMnet:Q5XEP2KEGG:ath:AT1G62740KO:K09553
ncoils:CoilOMA:LDACNEAPaxDb:Q5XEP2Pfam:PF00515Pfam:PF13414Pfam:Q5XEP2Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q5XEP2PRIDE:Q5XEP2PRO:PR:Q5XEP2PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q5XEP2
Proteomes:UP000006548RefSeq:NP_176461.1SMART:SM00028SMART:SM00727SMR:Q5XEP2STRING:3702.AT1G62740.1SUPFAM:SSF48452
TAIR:AT1G62740tair10-symbols:Hop2UniGene:At.21185UniGene:At.48334UniProt:Q5XEP2
Coordinates (TAIR10) chr1:+:23231026..23233380
Molecular Weight (calculated) 64523.10 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.92
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEAKAKGN AAFSSGDFNS AVNHFTDAIN LTPTNHVLFS NRSAAHASLN HYDEALSDAK KTVELKPDWG KGYSRLGAAH LGLNQFDEAV EAYSKGLEID
101: PSNEGLKSGL ADAKASASRS RASAPNPFGD AFQGPEMWSK LTADPSTRGL LKQPDFVNMM KEIQRNPSNL NLYLQDQRVM QALGVLLNIQ IRTQQAGDDM
201: EIGEEEMAVP SRKEPEVEKK RKPEPEPEPE PEFGEEKQKK LKAQKEKELG NAAYKKKDFE TAIQHYSTAM EIDDEDISYI TNRAAVHLEM GKYDECIKDC
301: DKAVERGREL RSDYKMVAKA LTRKGTALGK MAKVSKDYEP VIQTYQKALT EHRNPETLKR LNEAERAKKE LEQQEYYDPN IGDEEREKGN DFFKEQKYPD
401: AVRHYTEAIK RNPKDPRAYS NRAACYTKLG AMPEGLKDAE KCIELDPTFL KGYSRKGAVQ FFMKEYDNAM ETYQKGLEHD PNNQELLDGV KRCVQQINKA
501: NRGDLTPEEL KERQAKGMQD PEIQNILTDP VMRQVLSDLQ ENPAAAQKHM QNPMIMNKIQ KLISSGIVQM K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)