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AT1G62500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 57491 Blast hits to 29077 proteins in 1537 species: Archae - 155; Bacteria - 10434; Metazoa - 25836; Fungi - 4596; Plants - 8968; Viruses - 1548; Other Eukaryotes - 5954 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JE5CeggNOG:ENOG410Z089EMBL:AC005698EMBL:AY045962EMBL:AY079346EMBL:AY087579EMBL:CP002684
EnsemblPlants:AT1G62500EnsemblPlants:AT1G62500.1entrez:842547GeneID:842547Gramene:AT1G62500.1hmmpanther:PTHR31731hmmpanther:PTHR31731:SF25
HOGENOM:HOG000153509InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT1G62500OMA:QALITCGPfam:PF14547Pfscan:PS51257
Proteomes:UP000006548RefSeq:NP_176439.1SMR:Q9SXE7STRING:3702.AT1G62500.1SUPFAM:SSF47699TAIR:AT1G62500TMHMM:TMhelix
UniGene:At.16344UniGene:At.72520UniProt:Q9SXE7
Coordinates (TAIR10) chr1:+:23132181..23133074
Molecular Weight (calculated) 29682.20 Da
IEP (calculated) 9.95
GRAVY (calculated) 0.16
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRVLASFF VFLIFTVITL PPTIQACTPC TRPHPPVPKP PQHGGGGGGG SKPPPHHGGK GGGKPPPHGG KGGGPPHHGG GGGGGGKSPP VVRPPPVVVR
101: PPPIIRPPPV VYPPPIVRPP PITRPPIIIP PIQPPPVTTP PGLLPPITTP PGLLPPVTTP PGLLPPVTTP PGLLPPIINP PPVTVPPPSS GYPPYGPPSG
201: GGGGGGGKQP TCPINALKLG ACVDVLGGLI HIGLGNPVEN VCCPVLQGLL ELEAAVCLCT TIRLKLLNLN IFIPLALQAL ITCGINPPSG FVCPPLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)