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AT1G62430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.822
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CDP-diacylglycerol synthase 1
Curator
Summary (TAIR10)
Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.
Computational
Description (TAIR10)
CDP-diacylglycerol synthase 1 (CDS1); CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 2 (TAIR:AT4G22340.1); Has 7098 Blast hits to 7086 proteins in 2534 species: Archae - 0; Bacteria - 4982; Metazoa - 186; Fungi - 135; Plants - 138; Viruses - 0; Other Eukaryotes - 1657 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G62430-MONOMEREC:2.7.7.41eggNOG:COG0575eggNOG:KOG1440EMBL:AC003113EMBL:CP002684EMBL:X94306
EnsemblPlants:AT1G62430EnsemblPlants:AT1G62430.1entrez:842541GeneID:842541Genevisible:O04928GO:GO:0004605GO:GO:0005783
GO:GO:0005789GO:GO:0006655GO:GO:0008654GO:GO:0016020GO:GO:0016021GO:GO:0016024GO:GO:0080186
Gramene:AT1G62430.1gramene_pathway:2.7.7.41gramene_pathway:PWY-5667gramene_pathway:PWY0-1319hmmpanther:PTHR13773hmmpanther:PTHR13773:SF13HOGENOM:HOG000209582
InParanoid:O04928InterPro:IPR000374InterPro:IPR016720iPTMnet:O04928KEGG:00564+2.7.7.41KEGG:04070+2.7.7.41KEGG:ath:AT1G62430
KO:K00981OMA:MICPVRDPaxDb:O04928Pfam:O04928Pfam:PF01148PhylomeDB:O04928PIR:T01455
PIRSF:PIRSF018269PRIDE:O04928PRO:PR:O04928PROSITE:PS01315ProteinModelPortal:O04928Proteomes:UP000006548Reactome:R-ATH-1483148
Reactome:R-ATH-1483226RefSeq:NP_176433.2scanprosite:PS01315SMR:O04928STRING:3702.AT1G62430.1TAIR:AT1G62430tair10-symbols:ATCDS1
tair10-symbols:CDS1TMHMM:TMhelixUniGene:At.23658UniPathway:UPA00557UniProt:O04928
Coordinates (TAIR10) chr1:-:23106274..23108923
Molecular Weight (calculated) 48662.20 Da
IEP (calculated) 9.53
GRAVY (calculated) 0.36
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEENVTSSP STPVHRLRHR RRSNEVVTDG DKVNASPLLV NDRNKYKSFM VRTYSTLWMI GGFVLVVYMG HLYITAMVVV IQIFMAKELF NLLRKAPEDK
101: CLPYIKQLNW HFFFTAMLFV YGRILSQRLA NTMTADQFFY RLVSGLIKYH MAICYLLYII GFMWFILTLK KKMYKYQFGQ YAWTHMILIV VFTQSSFTVA
201: NIFEGIFWFL LPASLIIIND IFAYIFGFFF GRTPLIKLSP KKTWEGFIGA SVTTIISAFV LANILGRFPW LTCPRQDLST GWLQCDADPL FKPEPFALPA
301: WIPEWFPWKE MTILPVQWHA LCLGLFASII APFGGFFASG FKRAFKIKDF GDSIPGHGGI TDRMDCQMVM AVFAYIYLQS FIVSQSVSVD KILDQILTNL
401: TFEEQQALFV KLGQMLKDKL S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)