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AT1G62330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G11990.1); Has 815 Blast hits to 808 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 815; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIR1eggNOG:ENOG41101M4EMBL:CP002684EnsemblPlants:AT1G62330EnsemblPlants:AT1G62330.1entrez:842531GeneID:842531
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016021GO:GO:0016757Gramene:AT1G62330.1hmmpanther:PTHR31933
hmmpanther:PTHR31933:SF4InParanoid:F4HYR4InterPro:IPR019378InterPro:IPR024709iPTMnet:F4HYR4KEGG:00514+2.4.1.221KEGG:ath:AT1G62330
OMA:PSFYLKNPaxDb:F4HYR4Pfam:PF10250PIRSF:PIRSF009360PRIDE:F4HYR4ProteinModelPortal:F4HYR4Proteomes:UP000006548
RefSeq:NP_176423.3STRING:3702.AT1G62330.1TAIR:AT1G62330TMHMM:TMhelixUniGene:At.14756UniGene:At.73999unipathway:UPA00378
UniProt:F4HYR4
Coordinates (TAIR10) chr1:+:23046965..23050053
Molecular Weight (calculated) 73300.20 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.32
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSERPDEEK PETRDVLRVQ DLIHGGGGAS PVQSPTRLGP TRFSEVAGDK ILNTGSNCIG SVLSWINGDP NRNLKNPVKR AKRKRIRTAK TAAFVIVLVG
101: FFIFVNWFML SQLHEGRAWL RRGFSKKTNL KPKLNPDPNS SVKRVSVKVS ANVQHKEKKK MGKPKKTYNG TYGRLLAYAA HALAEGQNKL EPKELWREPK
201: DQALAWKPCA DQRSWKPSDG KNGYIMVTAN GGINQQRVAV CNIVVVARML NATLVIPKFM FSDVWTDASQ FGDIYQVEHF IKYLSPDIRI VKKLPKELQS
301: LDLEAIGSVV TDIDVMKEAK PGFYMKHILP LLLKNRVVHF LGFGNRLAFD PIPFELQRLR CRCNFHALNF VPKIQETGAI LVRRLRDSGS HLAPVDPYLV
401: GPKFASFILD KKAGPLHKAS KYLAVHLRFE IDMVAHSLCY FGGGDAEKAE LDAYREKHFP TLANLTKTQK MPSPDDLRTE GLCPLSPEEA VLMLAGLGFS
501: RKTRVFVAGA NIYGGNKRLA ALTSLYPNLV TKENVLSQTE LEPFKNFSSQ LAVLDFIACA ASDAFAMTDS GSQLSSLVSG YRIYYGAGKM PTIRPNKRRF
601: SDILLKNNTI EWKVFEQRVR KTVRQTKHVL VRPTGRSVYR YPRCKECMCN ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)