suba logo
AT1G62310.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription factor jumonji (jmjC) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 795 Blast hits to 740 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 384; Fungi - 24; Plants - 360; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTAAeggNOG:KOG1356EMBL:AB493515EMBL:CP002684EnsemblPlants:AT1G62310EnsemblPlants:AT1G62310.1entrez:842529
GeneID:842529GO:GO:0008270Gramene:AT1G62310.1hmmpanther:PTHR12549hmmpanther:PTHR12549:SF16HOGENOM:HOG000243122InterPro:IPR001841
InterPro:IPR003347InterPro:IPR018866KEGG:ath:AT1G62310KO:K15601OMA:CIRKWYPPfam:PF02373Pfam:PF10497
Pfscan:PS50089Pfscan:PS51184PhylomeDB:C0SV12PROSITE:PS50089PROSITE:PS51184Proteomes:UP000006548Reactome:R-ATH-983231
RefSeq:NP_176421.1SMART:SM00558SUPFAM:SSF51197TAIR:AT1G62310UniGene:At.36279UniGene:At.68585UniProt:C0SV12
Coordinates (TAIR10) chr1:-:23036039..23039301
Molecular Weight (calculated) 101482.00 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.68
Length 883 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGVKLEHM NCFQLSYQYS WTTRKKRTLK PFMSKGSSPS SSSDSRKRKL SRAEDSDDSA VKRNAKRRRK ICKVEEYYED DDCILSDWVQ RNTAKRIDKR
101: NEEVEVMVKI ESGDDCTIGK WFSDVSSKRK DKRQVEVDED EEWEEEVTLC SKIKATSSRS RTHSLSANSP ENVTDVISPC RSRSPASNVS DSIQKNDCTS
201: SRKQSGPICH QCLKGERITL LICSECEKTM FCLQCIRKWY PNLSEDDVVE KCPLCRQNCN CSKCLHLNGL IETSKRELAK SERRHHLQYL ITLMLPFLNK
301: LSIFQKLEIE FEATVQGKLP SEVEITAAIS YTDERVYCDH CATSIVDLHR SCPKCSYELC LKCCQEIREG SLSERPEMKF HYVDRGHRYM HGLDAAEPSL
401: SSTFEDEEAN PSDAKWSLGE NGSITCAPEK LGGCGERMLE LRRILPLTWM SDLEHKAETF LSSYNISPRM LNCRCSSLET ELTRKSASRT TSSDNYLFCP
501: ESLGVLKEEE LLHFQEHWAK GEPVIVRNAL DNTPGLSWEP MVMWRALCEN VNSTSSSEMS QVKAIDCLAN CEVEINTRQF FEGYSKGRTY ENFWPEMLKL
601: KDWPPSDKFE DLLPRHCDEF ISALPFQEYS DPRTGILNIA TKLPEGFIKP DLGPKTYIAY GIPDELGRGD SVTKLHCDMS DAVNILTHTA EVTLSQEQIS
701: SVKALKQKHK LQNKVDKQST EDCNEKEEEE EEELNMPEIS SNENEETGSA LWDIFRREDV PKLEEYLRKH CKEFRHTYCS PVTKVYHPIH DQSCYLTLEH
801: KRKLKAEYGI EPWTFVQKLG EAVFIPAGCP HQVRNLKSCT KVAVDFVSPE NIHECLRLTE EFRQLPKNHK AREDKLEASL LSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)