AT1G62310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription factor jumonji (jmjC) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 795 Blast hits to 740 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 384; Fungi - 24; Plants - 360; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23036039..23039301 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101482.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 883 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSGVKLEHM NCFQLSYQYS WTTRKKRTLK PFMSKGSSPS SSSDSRKRKL SRAEDSDDSA VKRNAKRRRK ICKVEEYYED DDCILSDWVQ RNTAKRIDKR 101: NEEVEVMVKI ESGDDCTIGK WFSDVSSKRK DKRQVEVDED EEWEEEVTLC SKIKATSSRS RTHSLSANSP ENVTDVISPC RSRSPASNVS DSIQKNDCTS 201: SRKQSGPICH QCLKGERITL LICSECEKTM FCLQCIRKWY PNLSEDDVVE KCPLCRQNCN CSKCLHLNGL IETSKRELAK SERRHHLQYL ITLMLPFLNK 301: LSIFQKLEIE FEATVQGKLP SEVEITAAIS YTDERVYCDH CATSIVDLHR SCPKCSYELC LKCCQEIREG SLSERPEMKF HYVDRGHRYM HGLDAAEPSL 401: SSTFEDEEAN PSDAKWSLGE NGSITCAPEK LGGCGERMLE LRRILPLTWM SDLEHKAETF LSSYNISPRM LNCRCSSLET ELTRKSASRT TSSDNYLFCP 501: ESLGVLKEEE LLHFQEHWAK GEPVIVRNAL DNTPGLSWEP MVMWRALCEN VNSTSSSEMS QVKAIDCLAN CEVEINTRQF FEGYSKGRTY ENFWPEMLKL 601: KDWPPSDKFE DLLPRHCDEF ISALPFQEYS DPRTGILNIA TKLPEGFIKP DLGPKTYIAY GIPDELGRGD SVTKLHCDMS DAVNILTHTA EVTLSQEQIS 701: SVKALKQKHK LQNKVDKQST EDCNEKEEEE EEELNMPEIS SNENEETGSA LWDIFRREDV PKLEEYLRKH CKEFRHTYCS PVTKVYHPIH DQSCYLTLEH 801: KRKLKAEYGI EPWTFVQKLG EAVFIPAGCP HQVRNLKSCT KVAVDFVSPE NIHECLRLTE EFRQLPKNHK AREDKLEASL LSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)