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AT1G62300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
Encodes a transcription factor WRKY6. Regulates Phosphate1 (Pho1) expression in response to low phosphate (Pi) stress.
Computational
Description (TAIR10)
WRKY6; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G04450.1); Has 3824 Blast hits to 3363 proteins in 295 species: Archae - 0; Bacteria - 33; Metazoa - 119; Fungi - 43; Plants - 3509; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IENHeggNOG:ENOG410YDVMEMBL:AB493514EnsemblPlants:AT1G62300EnsemblPlants:AT1G62300.1entrez:842527ExpressionAtlas:C0SV11
Gene3D:2.20.25.80GeneID:842527GO:GO:0003700GO:GO:0043565Gramene:AT1G62300.1hmmpanther:PTHR31429hmmpanther:PTHR31429:SF16
InterPro:IPR003657KEGG:ath:AT1G62300MINT:MINT-8068075ncoils:CoilOMA:EMEDKRAPaxDb:C0SV11Pfam:PF03106
Pfam:Q9C519Pfscan:PS50811PhylomeDB:C0SV11PRIDE:C0SV11PROSITE:PS50811ProteinModelPortal:C0SV11RefSeq:NP_564792.1
SMART:SM00774SMR:C0SV11STRING:3702.AT1G62300.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT1G62300tair10-symbols:ATWRKY6
tair10-symbols:WRKY6UniGene:At.25260UniProt:C0SV11UniProt:Q9C519
Coordinates (TAIR10) chr1:-:23016887..23019155
Molecular Weight (calculated) 60596.40 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.81
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)