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AT1G62280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SLAC1 homologue 1
Curator
Summary (TAIR10)
Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.
Computational
Description (TAIR10)
SLAC1 homologue 1 (SLAH1); CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 4 (TAIR:AT1G62262.1); Has 719 Blast hits to 716 proteins in 282 species: Archae - 2; Bacteria - 524; Metazoa - 0; Fungi - 6; Plants - 154; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEAVeggNOG:ENOG410YDIVEMBL:AC000375EMBL:BT004052
EMBL:BT021090EMBL:CP002684EnsemblPlants:AT1G62280EnsemblPlants:AT1G62280.1
entrez:842525GeneID:842525Genevisible:Q5E930GO:GO:0005886
GO:GO:0006873GO:GO:0008308GO:GO:0016021Gramene:AT1G62280.1
hmmpanther:PTHR31269hmmpanther:PTHR31269:SF9HOGENOM:HOG000237712InParanoid:Q5E930
InterPro:IPR004695InterPro:IPR030183KEGG:ath:AT1G62280OMA:GWNECAL
PANTHER:PTHR31269:SF9PaxDb:Q5E930Pfam:PF03595Pfam:Q5E930
PhylomeDB:Q5E930PIR:D96649PRIDE:Q5E930PRO:PR:Q5E930
ProteinModelPortal:Q5E930Proteomes:UP000006548RefSeq:NP_176418.2SMR:Q5E930
STRING:3702.AT1G62280.1TAIR:AT1G62280tair10-symbols:SLAH1TMHMM:TMhelix
UniGene:At.36280UniProt:Q5E930
Coordinates (TAIR10) chr1:-:23007309..23008540
Molecular Weight (calculated) 43409.90 Da
IEP (calculated) 9.13
GRAVY (calculated) 0.48
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)