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AT1G62180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 5'adenylylphosphosulfate reductase 2
Curator
Summary (TAIR10)
encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.
Computational
Description (TAIR10)
5'adenylylphosphosulfate reductase 2 (APR2); FUNCTIONS IN: adenylyl-sulfate reductase activity, phosphoadenylyl-sulfate reductase (thioredoxin) activity; INVOLVED IN: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin), sulfate assimilation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 3 (TAIR:AT4G21990.1); Has 5381 Blast hits to 4904 proteins in 1602 species: Archae - 157; Bacteria - 2618; Metazoa - 1060; Fungi - 451; Plants - 490; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-836-MONOMERBioCyc:MetaCyc:AT1G62180-MONOMEREC:1.8.4.9eggNOG:COG0175eggNOG:KOG0189eggNOG:KOG0191EMBL:AC000375
EMBL:AF016283EMBL:AF023167EMBL:AF360192EMBL:AY040005EMBL:AY088665EMBL:CP002684EMBL:U53866
EMBL:U56921EMBL:U96045EnsemblPlants:AT1G62180EnsemblPlants:AT1G62180.1entrez:842514ExpressionAtlas:P92981Gene3D:3.40.30.10
Gene3D:3.40.50.620GeneID:842514Genevisible:P92981GO:GO:0000103GO:GO:0004604GO:GO:0009507GO:GO:0009570
GO:GO:0009973GO:GO:0019344GO:GO:0019379GO:GO:0033741GO:GO:0045454hmmpanther:PTHR23293hmmpanther:PTHR23293:SF11
HOGENOM:HOG000242337IntAct:P92981InterPro:IPR002500InterPro:IPR004508InterPro:IPR012336InterPro:IPR013766InterPro:IPR014729
KEGG:00920+1.8.4.9ncoils:CoilOMA:KWNPLANPaxDb:P92981Pfam:P92981Pfam:PF00085Pfam:PF01507
Pfscan:PS51352PhylomeDB:P92981PIR:C96648PRIDE:P92981PRO:PR:P92981PROSITE:PS51352ProteinModelPortal:P92981
Proteomes:UP000006548RefSeq:NP_176409.1SMR:P92981STRING:3702.AT1G62180.1SUPFAM:SSF52402SUPFAM:SSF52833TAIR:AT1G62180
tair10-symbols:APR2tair10-symbols:APSRtair10-symbols:ATAPR2tair10-symbols:PRHtair10-symbols:PRH43TIGRfam:TIGR00424TIGRFAMs:TIGR00424
UniGene:At.25368UniGene:At.74995UniProt:P92981
Coordinates (TAIR10) chr1:-:22975794..22977465
Molecular Weight (calculated) 50658.40 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.36
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MALAVTSSST AISGSSFSRS GASSESKALQ ICSIRLSDRT HLSQRRYSMK PLNAESHSRS ESWVTRASTL IAPEVEEKGG EVEDFEQLAK KLEDASPLEI
101: MDKALERFGD QIAIAFSGAE DVALIEYARL TGKPFRVFSL DTGRLNPETY RLFDAVEKQY GIRIEYMFPD AVEVQALVRN KGLFSFYEDG HQECCRVRKV
201: RPLRRALKGL KAWITGQRKD QSPGTRSEIP IVQVDPVFEG LDGGVGSLVK WNPLANVEGA DVWNFLRTMD VPVNALHAQG YVSIGCEPCT RPVLPGQHER
301: EGRWWWEDAK AKECGLHKGN IKEEDGAADS KPAAVQEIFE SNNVVALSKG GVENLLKLEN RKEAWLVVLY APWCPFCQAM EASYIELAEK LAGKGVKVAK
401: FRADGEQKEF AKQELQLGSF PTILLFPKRA PRAIKYPSEH RDVDSLMSFV NLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)