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AT1G62150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62085.1); Has 880 Blast hits to 773 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 866; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AK118965EMBL:BT005682
EMBL:CP002684EnsemblPlants:AT1G62150EnsemblPlants:AT1G62150.1entrez:842511
GeneID:842511GO:GO:0003690GO:GO:0005739GO:GO:0006355
Gramene:AT1G62150.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF31HOGENOM:HOG000113939
InterPro:IPR003690KEGG:ath:AT1G62150KO:K15032OMA:CGLCEDE
Pfam:PF02536PhylomeDB:Q8GWB0Proteomes:UP000006548RefSeq:NP_176406.1
SMART:SM00733STRING:3702.AT1G62150.1TAIR:AT1G62150UniGene:At.10248
UniProt:Q8GWB0
Coordinates (TAIR10) chr1:-:22970198..22971589
Molecular Weight (calculated) 52068.60 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.06
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSSLVPHGK RLVQFQKGRD FSVSVKLLQN VFSVFSNSFS SVATAADVSF RDSRKGNNFT VSYLVDSLGL ASKLAESISM KVSFENKGNP DTVLNLLRSH
101: EFTDSQISSI ISDYPTLLVA DAENSLGPKL LLMQSRGASS SELTEIVSKV PKILGMKGDK SIGRYYDIVK EIIEADKSSK FEKLCHSLPE GSKQENKIRN
201: VLVLRDLGVP QRLLFSLLFS NHHVCCGKEK FEESLNKVVG MGFDPTTPKF VEALCIVYGL SDKRLEENFN VYKRFGLTVN DVWELFKKCP AFLGYSENRI
301: IQTFEALKRC GLCEDEVLSV FKKNPLCLRA SEQQILNSME TFIGLGFSRD EFVMMVKCLP QCIGYSAEMV KKKTEFVVKK MNWPLKVITL FPQVLGYSME
401: KRTVPRCNVI KALMSKGLLG SELPPMASVL ACTDQTFLKR YVVEHDEKLV LELMSIFNQD RVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)