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AT1G62130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G24860.1); Has 28359 Blast hits to 26057 proteins in 3006 species: Archae - 1474; Bacteria - 9731; Metazoa - 4550; Fungi - 3212; Plants - 2735; Viruses - 22; Other Eukaryotes - 6635 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0464eggNOG:KOG0737EMBL:CP002684EnsemblPlants:AT1G62130EnsemblPlants:AT1G62130.1entrez:842509Gene3D:2.60.200.20
Gene3D:3.40.50.300GeneID:842509GO:GO:0005524Gramene:AT1G62130.1hmmpanther:PTHR23074hmmpanther:PTHR23074:SF84InParanoid:F4HX45
InterPro:IPR000253InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR008984InterPro:IPR027417KEGG:ath:AT1G62130
ncoils:CoilOMA:CKITRIQPaxDb:F4HX45Pfam:PF00004PRIDE:F4HX45PROSITE:PS00674ProteinModelPortal:F4HX45
Proteomes:UP000006548RefSeq:NP_176404.3scanprosite:PS00674SMART:SM00382SMR:F4HX45STRING:3702.AT1G62130.1SUPFAM:SSF49879
SUPFAM:SSF52540TAIR:AT1G62130UniGene:At.52318UniProt:F4HX45
Coordinates (TAIR10) chr1:-:22962365..22968920
Molecular Weight (calculated) 114917.00 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.27
Length 1043 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSPGRSESI SGENNTTLPD GSSGKRIPPS SPSGDKSPSS KRSKLGDGSG ASTDSSEAPT SEDAKIAEGL TPTLPDSSFS GWTYRHCTFK TPWCKLLSQS
0101: AKQQNLCLYE SSCTFGSCLT SDFTLHDRNL GAFLCKITRI QRNGNVVAVL DITGTGGPLR INKAFVIKNV SHELHSGDEL VFGLNRSYAF IYQQMSKVTV
0201: ISGGEQVPAG KFLQLEREAR DPSRVSMLAS LEISRENPAT SGVQEGVEGY FPVNNQSNKA ADSGVVISHN QDSKMEILDE ENEVTRNRRA QQAAKFREYI
0301: RAGIVDGKRL EFSFENFPYY LSEHTKYVLL AVSDMHLNKM NIGYAPYASD LTILNPRILL SGPAGSEIYQ EILAKALANS FNAKLLIFDS NPILGVMTAK
0401: EFESLMNGPA LIDRGKSLDL SSGQGDSSIP SPATSPRSFG TPISGLLILH WGKTLAGDRV RFFGDELCPG LPTSRGPPYG FIGKVLLVFD ENPSAKVGVR
0501: FENPVPDGVD LGQLCEMGHG FFCSATDLQF ESSASDDLNE LLVTKLFEVA HDQSRTCPVI IFLKDAEKYF VGNSHFCSAF KSKLEVISDN LIVICSQTHS
0601: DNPKEKGIGR LTDLFVNKVT IYMPQGEELL KSWKYHLDRD AETLKMKANY NHLRMVLGRC GIECEGIETL CMKDLTLRRD SAEKIIGWAL SHHIKSNPGA
0701: DPDVRVILSL ESLKCGIELL EIESKKSLKD IVTENTFEIS DIIPPSEIGV TFDDIGALEN VKDTLKELVM LPFQWPELFC KGQLTKPCNG ILLFGPSGTG
0801: KTMLAKAVAT EAGANLINMS MSRWFSEGEK YVKAVFSLAS KISPSIIFLD EVESMLHRYR LKTKNEFIIN WDGLRTNEKE RVLVLAATNR PFDLDEAVIR
0901: RLPHRLMVGL PDARSRSKIL KVILSKEDLS PDFDIDEVAS MTNGYSGNDL KNLCVTAARR RIIEIVEKEK SERDAAVAEG RVPPAGSGGS DLRVLKMEDF
1001: RNALELVSMS ISSKSVNMTA LRQWNEDYGE GGSRRNESFS QYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)