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AT1G62040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
autophagy 8c (ATG8C); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT2G05630.1); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 312 (source: NCBI BLink).
Protein Annotations
BioGrid:27722eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073177EMBL:AC004392EMBL:AK118776EMBL:AY085871
EMBL:BT005441EMBL:CP002684EnsemblPlants:AT1G62040EnsemblPlants:AT1G62040.1entrez:842499ExpressionAtlas:Q8S927GeneID:842499
Genevisible:Q8S927GO:GO:0000421GO:GO:0005874GO:GO:0006914GO:GO:0015031GO:GO:0033110hmmpanther:PTHR10969
hmmpanther:PTHR10969:SF43HOGENOM:HOG000232034InParanoid:Q8S927InterPro:IPR004241InterPro:IPR029071PANTHER:PTHR10969PaxDb:Q8S927
Pfam:PF02991Pfam:Q8S927PhylomeDB:Q8S927PIR:T02148PRO:PR:Q8S927ProteinModelPortal:Q8S927Proteomes:UP000006548
RefSeq:NP_176395.1SMR:Q8S927STRING:3702.AT1G62040.2SUPFAM:SSF54236TAIR:AT1G62040tair10-symbols:ATG8CUniGene:At.36324
UniProt:Q8S927
Coordinates (TAIR10) chr1:+:22933216..22934253
Molecular Weight (calculated) 13733.60 Da
IEP (calculated) 9.31
GRAVY (calculated) -0.38
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)