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AT1G61900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:17317660 (2007): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE7ZeggNOG:ENOG410YBW4EMBL:AC004392EMBL:AK230285
EMBL:BT002490EMBL:BT006577EMBL:CP002684EnsemblPlants:AT1G61900
EnsemblPlants:AT1G61900.1entrez:842486ExpressionAtlas:Q8GUI4GeneID:842486
Genevisible:Q8GUI4GO:GO:0005886GO:GO:0009506GO:GO:0031225
GO:GO:0046658hmmpanther:PTHR33831hmmpanther:PTHR33831:SF2HOGENOM:HOG000084383
InParanoid:Q8GUI4OMA:TSCCKAMPaxDb:Q8GUI4Pfam:Q8GUI4
PhylomeDB:Q8GUI4PIR:T02135PRIDE:Q8GUI4PRO:PR:Q8GUI4
Proteomes:UP000006548RefSeq:NP_176382.2RefSeq:NP_974068.1STRING:3702.AT1G61900.1
TAIR:AT1G61900UniGene:At.21877UniProt:Q8GUI4
Coordinates (TAIR10) chr1:-:22882508..22884722
Molecular Weight (calculated) 47031.00 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.07
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRAEFEMG LFVILQSMFL ISLCSSQKPE EFLPEISPDT SPQPFLPFIA PSPMVPYINS TMPKLSGLCS LNFSASESLI QTTSHNCWTV FAPLLANVMC
101: CPQLDATLTI ILGKASKETG LLALNRTQSK HCLSDLEQIL VGKGASGQLN KICSIHSSNL TSSSCPVINV DEFESTVDTA KLLLACEKID PVKECCEEAC
201: QNAILDAATN ISLKASETLT DNSDRINDCK NVVNRWLATK LDPSRVKETL RGLANCKINR VCPLVFPHMK HIGGNCSNEL SNQTGCCRAM ESYVSHLQKQ
301: TLITNLQALD CATSLGTKLQ KLNITKNIFS VCHISLKDFS LQVGNQESGC LLPSLPSDAI FDKDTGISFT CDLNDNIPAP WPSSSLSSAS TCKKPVRIPA
401: LPAAASSQPR LHDEGVTRLV IFVLSMLLVM LLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)