suba logo
AT1G61620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoinositide binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phosphoinositide binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Nitric oxide synthase-interacting (InterPro:IPR016818), Zinc finger, RING-type (InterPro:IPR001841); Has 510 Blast hits to 510 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 129; Plants - 138; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQYReggNOG:KOG3039EMBL:AC005850EMBL:AY085557
EMBL:BT026113EMBL:CP002684EMBL:DQ059102EnsemblPlants:AT1G61620
EnsemblPlants:AT1G61620.1entrez:842458Gene3D:3.30.40.10GeneID:842458
GO:GO:0005737GO:GO:0008270GO:GO:0009640GO:GO:0016567
GO:GO:0016607GO:GO:0031648GO:GO:0050999GO:GO:0061630
Gramene:AT1G61620.1hmmpanther:PTHR13063hmmpanther:PTHR13063:SF10InterPro:IPR001841
InterPro:IPR013083InterPro:IPR016818InterPro:IPR017907InterPro:IPR027799
InterPro:IPR031790KEGG:ath:AT1G61620KO:K13125ncoils:Coil
OMA:NESMRRFPANTHER:PTHR13063:SF10Pfam:PF04641Pfam:PF15906
Pfscan:PS50089PhylomeDB:Q9SY88PIR:F96641PIRSF:PIRSF023577
PRO:PR:Q9SY88PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_564781.1scanprosite:PS00518SMART:SM00184SMR:Q9SY88
SUPFAM:SSF57850TAIR:AT1G61620UniGene:At.58060UniGene:At.71813
UniProt:Q9SY88
Coordinates (TAIR10) chr1:+:22737653..22739209
Molecular Weight (calculated) 35025.60 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.77
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQRHSKNNN DLAYFTYDEK KKLGYGTQRE RLGRDSIKPF DACSLCLKPF IDPMCCHKGH VFCRECILEC FLAQKKDIQR RLAAHSSQKK QDKDEEEERL
101: MLQKARELDE FDQQNHSAMP RNSDKNHNED KNGFHGANSV KTTSFEEEAL RTMKAFWLPS ATPAASVRVD APETHTVCPE GKEKLKLKNL FAIRFTEDNS
201: EEEETKTKSA SSSSYDKSYI CPSCKVTLTN TMSLVALSSC GHVFCKKCAE KFMPVDKVCL VCDKPCKDRN LVGLKKGGTG FAEHDDHLEA KEYKHLGSGS
301: GLGLVRPVKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)