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AT1G61520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I light harvesting complex gene 3
Curator
Summary (TAIR10)
PSI type III chlorophyll a/b-binding protein (Lhca3*1)
Computational
Description (TAIR10)
photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2); Has 2380 Blast hits to 2284 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2029; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHHSeggNOG:ENOG410ZM8EEMBL:AC005850EMBL:AK228436EMBL:AY059879EMBL:AY086439EMBL:AY093370
EMBL:CP002684EMBL:U01103EnsemblPlants:AT1G61520EnsemblPlants:AT1G61520.1EnsemblPlants:AT1G61520.2EnsemblPlants:AT1G61520.3entrez:842446
ExpressionAtlas:Q9SY97Gene3D:1.10.3460.10GeneID:842446GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009522
GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009644GO:GO:0009645GO:GO:0009735GO:GO:0009768
GO:GO:0009941GO:GO:0010287GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872hmmpanther:PTHR21649hmmpanther:PTHR21649:SF14HOGENOM:HOG000238033InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329
OMA:WFKTGVIPANTHER:PTHR21649PDB:2O01PDBsum:2O01Pfam:PF00504PhylomeDB:Q9SY97PIR:E96640
ProMEX:Q9SY97Proteomes:UP000006548RefSeq:NP_001031217.1RefSeq:NP_001185280.1RefSeq:NP_176347.1SMR:Q9SY97STRING:3702.AT1G61520.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G61520tair10-symbols:LHCA3TCDB:5.B.4.1.1UniGene:At.20472UniGene:At.21403
UniGene:At.2877UniGene:At.71924UniGene:At.71944UniProt:Q9SY97
Coordinates (TAIR10) chr1:+:22700152..22701149
Molecular Weight (calculated) 29183.10 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.01
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)