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AT1G61150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.853
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LisH and RanBPM domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT4G09300.1); Has 1004 Blast hits to 957 proteins in 195 species: Archae - 2; Bacteria - 0; Metazoa - 468; Fungi - 227; Plants - 231; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRG3eggNOG:KOG2659EMBL:AK228143EMBL:BT003122EMBL:CP002684EnsemblPlants:AT1G61150EnsemblPlants:AT1G61150.1
entrez:842408ExpressionAtlas:Q84WK5GeneID:842408Gramene:AT1G61150.1hmmpanther:PTHR12864HOGENOM:HOG000182512IntAct:Q84WK5
InterPro:IPR006594InterPro:IPR006595InterPro:IPR013144InterPro:IPR024964ncoils:CoilOMA:KFQHEAEPfam:PF08513
Pfam:PF10607Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q84WK5PROSITE:PS50896PROSITE:PS50897Proteomes:UP000006548
RefSeq:NP_176310.3SMART:SM00667SMART:SM00668SMART:SM00757STRING:3702.AT1G61150.1TAIR:AT1G61150UniGene:At.43628
UniGene:At.69984UniProt:Q84WK5
Coordinates (TAIR10) chr1:+:22542928..22544355
Molecular Weight (calculated) 27787.00 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.52
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLFRIFINQ LEEDDEDMAT SKKMITREEW EKKLNAVKLR KEDMNTLVMN FLVTEGYVEA AEKFQRESGT KPEIDLATIT DRMAVKKAVQ NGNVEDAIEK
101: VNDLNPEILD TNPELFFHLQ QQRLIELIRQ GKTEEALEFA QEELAPRGEE NQAFLEELEK TVALLVFDDA STCPVKELLD LSHRLKTASE VNAAILTSQS
201: HEKDPKLPSL LKMLIWAQTQ LDEKAVYPHI NDLSTGKLED PSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)