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AT1G61140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INU3eggNOG:ENOG410XPDUEMBL:CP002684EnsemblPlants:AT1G61140EnsemblPlants:AT1G61140.1entrez:842407ExpressionAtlas:F4HTG1
Gene3D:3.30.40.10Gene3D:3.40.50.300GeneID:842407GO:GO:0004386GO:GO:0005524GO:GO:0005737GO:GO:0008270
GO:GO:0009553GO:GO:0048025Gramene:AT1G61140.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF705InParanoid:F4HTG1InterPro:IPR000330
InterPro:IPR001650InterPro:IPR001841InterPro:IPR013083InterPro:IPR014001InterPro:IPR017907InterPro:IPR027417OMA:WADELHK
PaxDb:F4HTG1Pfam:PF00176Pfam:PF00271Pfam:PF13923Pfscan:PS50089Pfscan:PS51192Pfscan:PS51194
PRIDE:F4HTG1PROSITE:PS00518PROSITE:PS50089PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4HTG1Proteomes:UP000006548
RefSeq:NP_176309.2scanprosite:PS00518SMART:SM00184SMART:SM00487SMART:SM00490SMR:F4HTG1STRING:3702.AT1G61140.1
SUPFAM:SSF52540SUPFAM:SSF57850TAIR:AT1G61140tair10-symbols:EDA16UniGene:At.36526UniGene:At.68763UniProt:F4HTG1
Coordinates (TAIR10) chr1:-:22535038..22540610
Molecular Weight (calculated) 141136.00 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.46
Length 1280 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGEEGSMFGL GGEFPVDDCD GGFEFEDDDE TIDIETLYRI LDEKPDSAEG SQENLSPVGS SADELKDSQL LNGSFDEHVK MEAGLSPSPA HTCSASLKDW
0101: FSLSQGEQPV ETCGVSQSEM TSCSISSSFS DPDGNMMAFN PVNCDVDTVS KQDDKIIDSK SMLTPYFDNV TGYGVGLGAN HNSSAMSVFF NNSNSLSDSA
0201: DNYVSSAQDC YNTSGTSLSD HTPNSVQNFA FEFFPNKEEA VNDVESGVSE SQSDGASRMI FDRHGRVDNG SLERKPPIDF SSARGISFKF ESNPSVSPAC
0301: VKPYNSFDSH LADSDLDRPN NYSCSFQDNK TVHVKVKPEA ESEKVVYSSV PGEFSVRDDA YLSGETNRWW SGASSSAVSY QTDIEKGYSY MAPQTALPSQ
0401: DSGKISSNHF YDSDTCLQYV VEDPSPVTQN NEYKDFQIQQ GDREYIQPRG IDSQFSNASF ESVQSHSSEC ISDSDDDSDV CIIEPYGQSA IPHRPLAMKM
0501: PVVSSEYSTV SHNFNQSGGL KLQSNKENMI FQAALQDLTQ PNSEAILPDG VLTVPLLRHQ RIALSWMAQK ETSGFPCSGG ILADDQGLGK TVSTIALILK
0601: ERSKPAQACE ESTKKEIFDL ESETGECAPL KPSGRSKHFE HSQLLSNENK VGGDSVGKVT GRPAAGTLVV CPTSVMRQWA DELHKKVTSE ANLSVLVYHG
0701: SSRTKDPHEL AKYDVVVTTF SIVSMEVPKQ PLVDDEDEEK DGVHDGGTAA TGFCSNKKRK YPPDSKKKGS KKKKVEFLSG PLAKVSWFRV VLDEAQSIKN
0801: YKTQVARACW GLRAKRRWCL SGTPIQNSID DLYSYFRFLK YDPYSSYVLF CSTIKNPITR NPVKGYQKLQ AILKTVMLRR TKGSLLDGKP IISLPPKSIE
0901: LRKVDFTVEE RDFYSKLEAE SRTQFREYAE AGTVKQNYVN ILLMLLRLRQ ACDHPLLVNG EYSFTWESSV GLAKKQIQSD ASLAICGICN DAPEDAVASV
1001: CGHVFCKQCI YERLTGDSNH CPFANCNVRL TISSLSSKTR LDDAMPDMQE RATSNSLSPC SDEDLPYGSS KIKAALEILQ SLPKAHDLTD SNQISENREY
1101: SGLSITPVKN EGMSVDVPIK VAGEKAIVFS QWTKMLNLLE ASLVSSHIQY RRLDGTMSVA ARDKAVQDFN TLPEVTVMIM SLKAASLGLN MVAACHVLML
1201: DLWWNPTTED QAIDRAHRIG QTRPVTVVRF TVKDTVEDRI LALQQKKRMM VASAFGEDEK GSRQSHLTVE DLSYLFMADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)