AT1G61140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22535038..22540610 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141136.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGEEGSMFGL GGEFPVDDCD GGFEFEDDDE TIDIETLYRI LDEKPDSAEG SQENLSPVGS SADELKDSQL LNGSFDEHVK MEAGLSPSPA HTCSASLKDW 0101: FSLSQGEQPV ETCGVSQSEM TSCSISSSFS DPDGNMMAFN PVNCDVDTVS KQDDKIIDSK SMLTPYFDNV TGYGVGLGAN HNSSAMSVFF NNSNSLSDSA 0201: DNYVSSAQDC YNTSGTSLSD HTPNSVQNFA FEFFPNKEEA VNDVESGVSE SQSDGASRMI FDRHGRVDNG SLERKPPIDF SSARGISFKF ESNPSVSPAC 0301: VKPYNSFDSH LADSDLDRPN NYSCSFQDNK TVHVKVKPEA ESEKVVYSSV PGEFSVRDDA YLSGETNRWW SGASSSAVSY QTDIEKGYSY MAPQTALPSQ 0401: DSGKISSNHF YDSDTCLQYV VEDPSPVTQN NEYKDFQIQQ GDREYIQPRG IDSQFSNASF ESVQSHSSEC ISDSDDDSDV CIIEPYGQSA IPHRPLAMKM 0501: PVVSSEYSTV SHNFNQSGGL KLQSNKENMI FQAALQDLTQ PNSEAILPDG VLTVPLLRHQ RIALSWMAQK ETSGFPCSGG ILADDQGLGK TVSTIALILK 0601: ERSKPAQACE ESTKKEIFDL ESETGECAPL KPSGRSKHFE HSQLLSNENK VGGDSVGKVT GRPAAGTLVV CPTSVMRQWA DELHKKVTSE ANLSVLVYHG 0701: SSRTKDPHEL AKYDVVVTTF SIVSMEVPKQ PLVDDEDEEK DGVHDGGTAA TGFCSNKKRK YPPDSKKKGS KKKKVEFLSG PLAKVSWFRV VLDEAQSIKN 0801: YKTQVARACW GLRAKRRWCL SGTPIQNSID DLYSYFRFLK YDPYSSYVLF CSTIKNPITR NPVKGYQKLQ AILKTVMLRR TKGSLLDGKP IISLPPKSIE 0901: LRKVDFTVEE RDFYSKLEAE SRTQFREYAE AGTVKQNYVN ILLMLLRLRQ ACDHPLLVNG EYSFTWESSV GLAKKQIQSD ASLAICGICN DAPEDAVASV 1001: CGHVFCKQCI YERLTGDSNH CPFANCNVRL TISSLSSKTR LDDAMPDMQE RATSNSLSPC SDEDLPYGSS KIKAALEILQ SLPKAHDLTD SNQISENREY 1101: SGLSITPVKN EGMSVDVPIK VAGEKAIVFS QWTKMLNLLE ASLVSSHIQY RRLDGTMSVA ARDKAVQDFN TLPEVTVMIM SLKAASLGLN MVAACHVLML 1201: DLWWNPTTED QAIDRAHRIG QTRPVTVVRF TVKDTVEDRI LALQQKKRMM VASAFGEDEK GSRQSHLTVE DLSYLFMADS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)