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AT1G61100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR class), putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
disease resistance protein (TIR class), putative; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 1636 Blast hits to 1307 proteins in 221 species: Archae - 4; Bacteria - 130; Metazoa - 666; Fungi - 143; Plants - 195; Viruses - 9; Other Eukaryotes - 489 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHVDeggNOG:ENOG411142FEMBL:AB091757EMBL:CP002684EnsemblPlants:AT1G61100EnsemblPlants:AT1G61100.1entrez:842403
ExpressionAtlas:F4HRR0GeneID:842403Gramene:AT1G61100.1hmmpanther:PTHR31008hmmpanther:PTHR31008:SF6OMA:MIPERNSProteomes:UP000006548
RefSeq:NP_176305.2STRING:3702.AT1G61100.1TAIR:AT1G61100UniGene:At.36532UniProt:F4HRR0
Coordinates (TAIR10) chr1:-:22508831..22512122
Molecular Weight (calculated) 89762.00 Da
IEP (calculated) 6.21
GRAVY (calculated) -0.89
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRAILDSA LFQLTPTRTR FDLVLFCGSK KEKLASGIFE PFVSHLKFAR DQISKGGYSI SLTPPSSHSS WFTKSTFDRF VRFVNTPAII ERFATLEKEI
101: LQIENSIQAN EIANAADALQ LQDGSNSGDS SNLKKSNESS KKESENGNEV VGEETSKIQL QRLLETRRTL LRREQAMAYA RGVVAGYEID SIDDLILFAD
201: AFGASRLREA CIMYKELWKK KHGDGLWMAE LAAVKACAPV DMSLLGSSGI ILTNEGAALS LNGTDSMPSN TDDKSVNLEQ HPSGVPNFQA PMGWPNHMPQ
301: YFYPSPYQGY PYPPMQHMPN QNQGNMPWPS RGKTSKKKGK GDSDGDESSE SSESSESESA SDDSASSLED QGKRHSRTSK NSRRSKKNRK KSSKTVIIRN
401: INYITPEGRN GDMEGNEFTD NGSIKETVDA AVGMLNEKRA HEGEVSGEEK RSNENWDSFQ NILMRHDDGS DVHSMDVIGQ EHFTHRGASV GANSNGLQTK
501: NTASGDSIIT THKYIEDGGD SFDHFESEDS ARRLPRTRDS TEECMLLLKR SEMLGDESKD MYNATRGESL VKKSGSGEDW FTASGNRAGK PEINYGRMSF
601: DDSILTSQGS DKSKKQEFVD DSFMVHSSSL AADDLYDSRW RPDMAADIVL ASDVDNGHAN EKHDSWEPND LCMIPERNSG DSLANDYSID FSAEANARLS
701: SNGTAQEKED KSGEKKNNVK NPETRKSKTP SRTRAETMSK TAKKPTVASR TMAQKNKFEK EEEMRKRIEN LVMERQKRIA ERSAMTASRK VSLDKGSSRA
801: PLVRERAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)