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AT1G61080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 309070 Blast hits to 105260 proteins in 2835 species: Archae - 563; Bacteria - 69679; Metazoa - 122906; Fungi - 37150; Plants - 37869; Viruses - 8514; Other Eukaryotes - 32389 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKEHeggNOG:ENOG410YIBWEMBL:AC018908EMBL:CP002684
EnsemblPlants:AT1G61080EnsemblPlants:AT1G61080.1entrez:842400GeneID:842400
Gramene:AT1G61080.1hmmpanther:PTHR31342hmmpanther:PTHR31342:SF16HOGENOM:HOG000152225
KEGG:ath:AT1G61080OMA:ISSNCMEPhylomeDB:Q9C946PIR:E96636
Proteomes:UP000006548RefSeq:NP_176303.1TAIR:AT1G61080UniGene:At.52297
UniProt:Q9C946
Coordinates (TAIR10) chr1:-:22493194..22497019
Molecular Weight (calculated) 97879.10 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.55
Length 907 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFGRKSSSK LQPVKGQASP KVSKSSKQDV KTSSSSPKPS SSPIPIRSSK SILSGSYLTS SRRVSSPIGN LKNISVKEAR SPKTSSSPKW TGNFILMVEL
101: RRKIFTFRDI IDLSTLDGSP SITDVRKPQP YILMVMHTMK DLQKICPEII HSSHIMEIRR ANVDKVLDHF FNALKSIGDS WIDNPEWIAK SKYWSSSVGK
201: NQSDRLVEKV LAALDGLIKM SKERFDMMEI DEEEEKKEST SPQTGKTSSS RVLSPSESFS DSKSSFGSRN SFCGSPTTPR SVLPESMMGS PGRVGDFANS
301: ASHLLWNMRV QALEKLSPID VKRLAIHILS QKEAQEPNES NDEDVISVVE EIKQKKDEIE SIDVKMETEE SVNLDEESVV LNGEQDTIMK ISSLESTSES
401: KLNHSEKYEN SSQLFPPPPP PPPPPPLSFI KTASLPLPSP PPTPPIADIA ISMPPPPPPP PPPPAVMPLK HFAPPPPPPL PPAVMPLKHF APPPPTPPAF
501: KPLKGSAPPP PPPPPLPTTI AAPPPPPPPP RAAVAPPPPP PPPGTAAAPP PPPPPPGTQA APPPPPPPPM QNRAPSPPPM PMGNSGSGGP PPPPPPMPLA
601: NGATPPPPPP PMAMANGAAG PPPPPPRMGM ANGAAGPPPP PGAARSLRPK KAATKLKRST QLGNLYRILK GKVEGRDPNA KTGSGSGRKA GAGSAPAGGK
701: QGMADALAEI TKKSAYFLQI QADIAKYMTS INELKIEITK FQTKDMTELL SFHRRVESVL ENLTDESQVL ARCEGFPQKK LEAMRMAVAL YTKLHGMITE
801: LQNMKIEPPL NQLLDKVERY FTKIKETMVD ISSNCMELAL KEKRDEKLVS PDAKPSLKKT VGSAKMLWRA FQFAFKVYTF AGGHDDRADS LTRELAHEIQ
901: TDSDPNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)