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AT1G61040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plus-3 domain-containing protein
Curator
Summary (TAIR10)
Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.
Computational
Description (TAIR10)
vernalization independence 5 (VIP5); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343); Has 7244 Blast hits to 3723 proteins in 490 species: Archae - 2; Bacteria - 3364; Metazoa - 2087; Fungi - 627; Plants - 250; Viruses - 32; Other Eukaryotes - 882 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5296eggNOG:KOG2402EMBL:AC018908EMBL:AY091764
EMBL:CP002684EnsemblPlants:AT1G61040EnsemblPlants:AT1G61040.1entrez:842395
GeneID:842395Genevisible:Q9C950GO:GO:0003677GO:GO:0005634
GO:GO:0006352GO:GO:0006368GO:GO:0009908GO:GO:0009910
GO:GO:0016570GO:GO:0016593GO:GO:0045893Gramene:AT1G61040.1
hmmpanther:PTHR13115hmmpanther:PTHR13115:SF8InterPro:IPR004343InterPro:IPR031102
iPTMnet:Q9C950KEGG:ath:AT1G61040KO:K15178ncoils:Coil
OMA:LKKRHQPPANTHER:PTHR13115PaxDb:Q9C950Pfam:PF03126
Pfam:Q9C950Pfscan:PS51360PhylomeDB:Q9C950PIR:A96636
PRO:PR:Q9C950PROSITE:PS51360ProteinModelPortal:Q9C950Proteomes:UP000006548
RefSeq:NP_176299.1SMART:SM00719SMR:Q9C950STRING:3702.AT1G61040.1
SUPFAM:0053761SUPFAM:SSF159042TAIR:AT1G61040tair10-symbols:VIP5
UniGene:At.36545UniProt:Q9C950
Coordinates (TAIR10) chr1:+:22483817..22485748
Molecular Weight (calculated) 71323.90 Da
IEP (calculated) 9.62
GRAVY (calculated) -1.05
Length 643 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDLENLLLE AAGRTNSAGR SRHPPSSRRR EGSYSDGSSD SRDDSDEDRG YASRKPSGSQ VPLKKRLEAE REDRAARVEG GYGDGPSDRE GDSSEESDFG
101: DDLYKNEEDR QKLAGMTEFQ REMILSERAD KKGDKNFTEK LRSKRESEKT PVSKKETQPL PASRGVRSSA RSADRAAAKD DALNELRAKR MKQQDPAALR
201: KLRDASKGGS GSRDFSSTKR KPLASSNLSS SSQSDSDSRS QSDDEGSNGG MLDSDDDRSD VPTFEDVKEV TIRRSKLAKW LMEPFFEELI VGCFVRVGIG
301: RSKSGPIYRL CWVKNVDATD PDKTYKLENK TTHKYLNVVW GNETSAARWQ MAMISDGHPL EEEYRQWIRE VERTNGRMPT KQDISEKKEA IQRTNSFVYS
401: AETVKQMLQE KKSASVRPMN VAAEKDRLRK ELEIAQSKND EAGVERIKSK IKQLDASRNK KGVDKKALKL AEMNKKNRAE NFKNASEVKS ITASLKAGEA
501: GYDPFSRRWT RSSNYYNGKN KGKDGEENEA AVAAAVETNG ADAGAGVEAT EAALEAAAEA GKLIDTRAPI GQGAEHNQLH NFELSLSLTA LQKYGGPQGV
601: QKAFMARKQL TEATVGCRVA ENDGKRHGLT LTVSDYKRRR GLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)