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AT1G60950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2Fe-2S ferredoxin-like superfamily protein
Curator
Summary (TAIR10)
encodes a major leaf ferredoxin
Computational
Description (TAIR10)
FED A; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: photosynthetic electron transport chain, response to light stimulus; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 7652 Blast hits to 7650 proteins in 1365 species: Archae - 135; Bacteria - 5670; Metazoa - 7; Fungi - 12; Plants - 625; Viruses - 5; Other Eukaryotes - 1198 (source: NCBI BLink).
Protein Annotations
BioGrid:27610eggNOG:COG0633eggNOG:ENOG410IYGQEMBL:AC018908EMBL:AF324706EMBL:AF326885EMBL:AF339705
EMBL:AK226379EMBL:AY093034EMBL:AY128936EMBL:CP002684EMBL:M35868EMBL:X51370EnsemblPlants:AT1G60950
EnsemblPlants:AT1G60950.1entrez:842386Gene3D:3.10.20.30GeneID:842386Genevisible:P16972GO:GO:0009055GO:GO:0009507
GO:GO:0009643GO:GO:0009767GO:GO:0046872GO:GO:0051537Gramene:AT1G60950.1hmmpanther:PTHR19370hmmpanther:PTHR19370:SF120
HOGENOM:HOG000217152InParanoid:P16972IntAct:P16972InterPro:IPR001041InterPro:IPR006058InterPro:IPR010241InterPro:IPR012675
iPTMnet:P16972KEGG:ath:AT1G60950KO:K02639OMA:LEVECDDPaxDb:P16972Pfam:P16972Pfam:PF00111
Pfscan:PS51085PhylomeDB:P16972PIR:S09979PRIDE:P16972PRO:PR:P16972PROSITE:PS00197PROSITE:PS51085
ProteinModelPortal:P16972Proteomes:UP000006548RefSeq:NP_176291.1scanprosite:PS00197SMR:P16972STRING:3702.AT1G60950.1SUPFAM:SSF54292
TAIR:AT1G60950tair10-symbols:ATFD2tair10-symbols:FED ATIGRfam:TIGR02008TIGRFAMs:TIGR02008UniGene:At.47579UniProt:P16972
Coordinates (TAIR10) chr1:+:22444565..22445011
Molecular Weight (calculated) 15540.10 Da
IEP (calculated) 4.10
GRAVY (calculated) -0.03
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)