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AT1G60730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60710.1); Has 28070 Blast hits to 28051 proteins in 2523 species: Archae - 645; Bacteria - 18780; Metazoa - 1413; Fungi - 2112; Plants - 1222; Viruses - 0; Other Eukaryotes - 3898 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60730-MONOMERBioCyc:ARA:GQT-1168-MONOMEREC:1.1.1.-EMBL:AC002292EMBL:AF361576EMBL:AY124862EMBL:CP002684
EnsemblPlants:AT1G60730EnsemblPlants:AT1G60730.1entrez:842367Gene3D:3.20.20.100GeneID:842367Genevisible:Q9ASZ9GO:GO:0016491
hmmpanther:PTHR11732hmmpanther:PTHR11732:SF226HOGENOM:HOG000250284InParanoid:Q9ASZ9InterPro:IPR001395InterPro:IPR023210iPTMnet:Q9ASZ9
KEGG:ath:AT1G60730OMA:GIRYAEGPANTHER:PTHR11732Pfam:PF00248Pfam:Q9ASZ9PhylomeDB:Q9ASZ9PIR:F96632
PRIDE:Q9ASZ9PRO:PR:Q9ASZ9ProteinModelPortal:Q9ASZ9Proteomes:UP000006548RefSeq:NP_001185274.1RefSeq:NP_564762.2RefSeq:NP_974056.1
SMR:Q9ASZ9SUPFAM:SSF51430TAIR:AT1G60730UniGene:At.27573UniProt:Q9ASZ9
Coordinates (TAIR10) chr1:-:22358327..22360082
Molecular Weight (calculated) 37859.50 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.18
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEACGVRRI KLGSQGLEVS AQGLGCMGLS AFYGTPKPET EAIALIHHAI HSGVTFLDTS DIYGPETNEL LLSKALKDGV REKVELATKY GIRYAEGKVE
101: FKGDPAYVRA ACEASLMRVD VACIDLYYQH RIDTRVPIEI TIGELKKLVE EGKIKYIGLS EASASTIRRA HAVHPITALQ IEWSLWSRDV EEDIIPTCRE
201: LGIGIVAYSP LGRGFFASGP KLVENLDNND VRKTLPRFQQ ENLDHNKILF EKVSAMSEKK GCTPAQLALA WVHHQGDDVC PIPGTTKIEN LNQNIGALSV
301: KLTPEEMSEL ESLAQPGFVK GERSISILTT FKNSETPPLS SWKAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)