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AT1G60680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.788
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60690.1); Has 31100 Blast hits to 31077 proteins in 2588 species: Archae - 657; Bacteria - 20302; Metazoa - 1863; Fungi - 2395; Plants - 1353; Viruses - 0; Other Eukaryotes - 4530 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60680-MONOMEREC:1.1.1.-eggNOG:COG0667eggNOG:KOG1575EMBL:AC002292EMBL:AK227526EMBL:BT006462
EMBL:CP002684EnsemblPlants:AT1G60680EnsemblPlants:AT1G60680.1entrez:842362Gene3D:3.20.20.100GeneID:842362Genevisible:Q84M96
GO:GO:0016491Gramene:AT1G60680.1hmmpanther:PTHR11732hmmpanther:PTHR11732:SF226HOGENOM:HOG000250284InterPro:IPR001395InterPro:IPR020471
InterPro:IPR023210KEGG:ath:AT1G60680OMA:THHAINSPANTHER:PTHR11732PaxDb:Q84M96Pfam:PF00248Pfam:Q84M96
PhylomeDB:Q84M96PIR:B96632PRIDE:Q84M96PRINTS:PR00069PRO:PR:Q84M96ProteinModelPortal:Q84M96Proteomes:UP000006548
RefSeq:NP_176267.3SMR:Q84M96STRING:3702.AT1G60680.1SUPFAM:SSF51430TAIR:AT1G60680UniGene:At.19209UniGene:At.43808
UniProt:Q84M96
Coordinates (TAIR10) chr1:-:22347824..22349236
Molecular Weight (calculated) 38271.00 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.26
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEACRVRRM KLGSQGLEVS AQGLGCMALS ARYGAPKPET DAIALLHHAI NSGVTFFDTS DMYGPETNEL LLGKALKDGV KEKVELATKF GFFIVEGEIS
101: EVRGDPEYVR AACEASLKRL DIACIDLYYQ HRIDTRVPIE ITMRELKKLV EEGKIKYIGL SEASASTIRR AHAVHPITAV QIEWSLWSRD AEEDIIPICR
201: ELGIGIVAYS PLGRGFLAAG PKLAENLEND DFRKTLPRFQ QENVDHNKIL FEKVSAMAEK KGCTPAQLAL AWVHHQGDDV CPIPGTTKIE NLNQNIRALS
301: VKLTPEEISE LDSLAKPESV KGERYMASMS TFKNSNTPPL SSWKAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)