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AT1G60600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : UbiA prenyltransferase family protein
Curator
Summary (TAIR10)
Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.
Computational
Description (TAIR10)
ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 2128 Blast hits to 2126 proteins in 766 species: Archae - 57; Bacteria - 1544; Metazoa - 40; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 438 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G60600EnsemblPlants:AT1G60600.1entrez:842354gramene_pathway:2.5.1.-
gramene_pathway:PWY-5027gramene_plant_reactome:1119353gramene_plant_reactome:6874942hmmpanther:PTHR13929
hmmpanther:PTHR13929:SF3Pfam:PF01040tair10-symbols:ABC4TIGRfam:TIGR02235
TMHMM:TMhelix
Coordinates (TAIR10) chr1:-:22324807..22326395
Molecular Weight (calculated) 31056.60 Da
IEP (calculated) 9.15
GRAVY (calculated) 0.71
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSVALVPLT VGASAAYLET GLFLARRYVT LLLSSILIIT WLNLSNDVYD FDTGADKNKM ESVVNLVGSR TGTLAAAITS LALGVSGLVW TSLNASNIRA
101: ILLLASAILC GYVYQCPPFR LSYQGLGEPL CFAAFGPFAT TAFYLLLGSS SEMRHLPLSG RVLSSSVLVG FTTSLILFCS HFHQVDGDLA VGKYSPLVRL
201: GTEKGAFVVR WTIRLLYSML LVLGLTRILP LPCTLMCFLT LPVGNLVSSY VEKHHKDNGK IFMAKYYCVR LHALLGAALS LGLVIAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)