AT1G60570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.841 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19930.1); Has 2159 Blast hits to 2040 proteins in 157 species: Archae - 8; Bacteria - 131; Metazoa - 640; Fungi - 8; Plants - 1197; Viruses - 129; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:22311836..22312981 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43957.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDDEEPPLK KNKLPVEEPT LIPSLPEELI LSILARVSRL SYRSLSLVCK RFHSLLTSGE IYRFRSLSGY TENCLYVCLR FSHTGRSHRW FMLREKNKSS 101: GYVLAPIPIS HSPSLHASSI VAVGSKIYKI GGVMDGSSVS ILDCWSHRWL EAPSMQMERD RPSANLIDGK IYVTGGCHRG SYNPSKWMEV FDLKTETWEP 201: VLCRSDRLTF ESYHERTNNL LVDGKLYIFW ADKGVVYNPK DDTWDSLEVP EMDMCLTLFY CCVIENVLYD FFYEELDIKW YDTKARTWRS LLNGMRELHK 301: FVRHASVTLA DYGGKMVMFW DKFVASGDGL GFHKTMMWCA MIALERSDSG EIWGKVEWFG PVLPNQIPLE YAFEYVGSVK V |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)