AT1G60560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.566 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWIM zinc finger family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22308791..22311277 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80982.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIVESLEEI PVQNPQVEDF SWADLTWTKF GTSEHHDQVA LVPYARVDEF IIGECSNAEC PTRFHIERGR KRSRGSLKEY KSDEYLEYRL YWCSFGPENY 101: GEGGGVLPSR KYRLNTRNRA ARPQSMRGCT CHFVVKRLYA RPSLALLIYN ERRHVNKAGF VCHGPLDRDA IGPGAKKIPY ICNEIQQQTM SMIYLGIPEE 201: NVLEKHIEGI QRYCGSDATV DSLASQYVHK LGMIIKRSTH ELDLDDQASI KIWAERNKKS IFFYQESSET DQFMLGIQTE WQLQQLVRFG HCSLVAADST 301: FGIKRLKYPL CTLLVFDSRH HALPVAWIIS RSYLKSDVEK WMKILLQRAQ SVEPGFKING FIIDDAATET DPIRDTFCCP ILFSLWRVRR SWLRNVVKKC 401: DSIEVQRDLF KCLGELVYSI WDGVDTTKAL EKLTQDFVDQ TAFMQYFTST WLPKIGMWLS TMKSLPLASQ EACGAIEAYH IKLKVKLFDD THLGALQRVD 501: WLVHKLTTEL HSSYWLDRYA DESDSFQNVK EEYIASTSWY RAMEIPDSAV TLDENNILLA KVQSQRDSDV TRVVWNPGSE FAFCDCTWSL QGNLCKHIIK 601: VNTMCENREG YGDSMSLRSF KEKLRNIKMK PMDDSIALDL SMALTLQMFD QIKQLVRLSG TNDISNIVND LPVKWGCKKG RTTIGIPASI AAFTKKRSQK 701: RKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)