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AT1G60470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : galactinol synthase 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
galactinol synthase 4 (GolS4); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 7 (TAIR:AT1G60450.1); Has 1247 Blast hits to 1246 proteins in 290 species: Archae - 0; Bacteria - 113; Metazoa - 260; Fungi - 270; Plants - 469; Viruses - 69; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:COG5597eggNOG:KOG1950EMBL:KJ138958EnsemblPlants:AT1G60470EnsemblPlants:AT1G60470.1entrez:842342
ExpressionAtlas:W8QP66Gene3D:3.90.550.10GeneID:842342GO:GO:0016757GO:GO:0046872Gramene:AT1G60470.1gramene_pathway:2.4.1.123
gramene_pathway:PWY-5337hmmpanther:PTHR11183hmmpanther:PTHR11183:SF53InterPro:IPR002495InterPro:IPR029044KEGG:ath:AT1G60470KO:K18819
OMA:ETFFPDWPaxDb:W8QP66Pfam:O22693Pfam:PF01501PhylomeDB:W8QP66PIR:H96629ProteinModelPortal:W8QP66
RefSeq:NP_176250.1SMR:W8QP66STRING:3702.AT1G60470.1SUPFAM:SSF53448tair10-symbols:AtGolS4tair10-symbols:GolS4UniGene:At.36646
UniGene:At.71323UniProt:O22693UniProt:W8QP66
Coordinates (TAIR10) chr1:-:22279181..22280454
Molecular Weight (calculated) 38513.00 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.23
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPEISVNPM YLSEKAHQAP PRRAYVTFLA GNGDYVKGVV GLAKGLRKVK SAYPLVVAML PDVPEEHREI LRSQGCVVRE IEPVYPPDNQ VEFAMAYYVL
101: NYSKLRIWNF EEYSKMIYLD ADIQVFDNID HLFDLSDAYF YAVMDCFCEK TWSHSLQYSI GYCQQCPEKV TWPEDMESPP PPLYFNAGMF VFEPSPLTYE
201: SLLQTLEITP PSPFAEQDFL NMFFEKVYKP IPLVYNLVLA MLWRHPENVE LEKVKVVHYC AAGSKPWRYT GEEANMDRED IKMLVDKWWD VYNDESLDFK
301: SKIPADAEET VTKSSILASV LEPEMTYFPA PSAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)