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AT1G60400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.938
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G60410.1); Has 2069 Blast hits to 2030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2069; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JHU4eggNOG:ENOG410Z9JMEMBL:AC004473EMBL:CP002684
EMBL:DQ446379EnsemblPlants:AT1G60400EnsemblPlants:AT1G60400.1entrez:842335
Gene3D:3.80.10.10GeneID:842335Genevisible:Q1PFI4hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216InParanoid:Q1PFI4InterPro:IPR001810
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT1G60400OMA:CPRLEYM
PaxDb:Q1PFI4Pfam:PF00646Pfam:PF07723Pfam:Q1PFI4
Pfscan:PS50181PhylomeDB:Q1PFI4PIR:T02290PRIDE:Q1PFI4
PRO:PR:Q1PFI4PROSITE:PS50181ProteinModelPortal:Q1PFI4Proteomes:UP000006548
RefSeq:NP_176243.1SMART:SM00256SMR:Q1PFI4SUPFAM:SSF52058
SUPFAM:SSF81383TAIR:AT1G60400UniGene:At.52287UniProt:Q1PFI4
Coordinates (TAIR10) chr1:+:22254405..22255798
Molecular Weight (calculated) 45866.50 Da
IEP (calculated) 4.91
GRAVY (calculated) 0.10
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRTSIKSIG SGIDRLSALP EHLLCRILSE LSTKDSVRTS VLSKHWRNLW LHVPVLELET SDFPDNLVFR EFIDRFVGFD KEIDLKSFDI FYDVNVLWYD
101: DFLWMIDDVV KRRVCDLMVT NNPYVVNEKL VKMPISLYSC ATLVNLNLSF VAMNNLPSES VCLPRVKTLY LHGVKLDGDS ILGTLVSSCS VLEDLTVVTH
201: PGDYEKVVCF RSQSVKSFTI ESQCEYKDPN VEIDCPRLEY MCIREYQSES FVVHSIGPYA KVDVDIFFEV EYEDPLAISM IRNFLTGISK VREMTISSRT
301: LEVIRGYHSM VKALPQFSNL SSLDALLVES YWELLPVFLG CCINLNSLVV ELDGLSEIEE FKVSPLLQDS LSARGFVQQK TPVSVTKTSS ERKIAAYFVK
401: KSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)