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AT1G60390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK7ReggNOG:ENOG410YDACEMBL:AC004473EMBL:AK227564EMBL:CP002684EnsemblPlants:AT1G60390EnsemblPlants:AT1G60390.1
entrez:842334GeneID:842334Genevisible:O80760GO:GO:0005618GO:GO:0048046Gramene:AT1G60390.1hmmpanther:PTHR31458
hmmpanther:PTHR31458:SF3HOGENOM:HOG000082581InParanoid:O80760InterPro:IPR004873iPTMnet:O80760KEGG:ath:AT1G60390OMA:RAVSCHQ
PaxDb:O80760Pfam:O80760Pfam:PF03181Pfscan:PS51277PhylomeDB:O80760PIR:T02289PRIDE:O80760
PRO:PR:O80760PROSITE:PS51277ProteinModelPortal:O80760Proteomes:UP000006548RefSeq:NP_176242.1SMART:SM01045STRING:3702.AT1G60390.1
TAIR:AT1G60390tair10-symbols:PG1UniGene:At.36663UniProt:O80760
Coordinates (TAIR10) chr1:-:22247611..22249556
Molecular Weight (calculated) 67765.80 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.49
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNIEATLFL CFFCIFSSSN VHFAGAKQTA GNITPSENPF TPKASLIRYW NNHINGDSPK PSFFLSKASP LTAVDSTRFA SLASNHALNT HHSDFCSAAK
101: LFCFPELAAH SLEKHGDDVN FAAYSGKNFT NYGSDRLSGA DSFKNYSGGD NIAVDSFRRY SRNSAGHDDG FTNYAGEVNV ADQSFTTYAT GTTGGSGEFT
201: NYNTDANEPN GRFTSYSDKA NGRSQTFTTY SENGNTGYQS FTSYSKNGNG APNEFSGYGT GSNVVNTGFT KYGESANGAN DSFTSYGENG NVPVNEFKGY
301: GDGGNGAVYG FKNYRDQSNI GVDSFSSYAK NSNNEKVNFV NYGKSFNLGS DNFTGYGQDN VGGNVSFKTY GQGQSFKVYT KDGVVFARYS NNVSSNGKTV
401: NKWVEEGKFF REAMLKEGTL MQMPDIKDKM PKRTFLPRNI VKNLPFSSST IGEIWRVFGA GENSSMAGII SSAVSECERP ASHGETKRCV GSAEDMIDFA
501: TSVLGRGVVV RTTENVVGSK KKVVIGKVNG INGGDVTRAV SCHQSLYPYL LYYCHSVPRV RVYETDLLDP KSLEKINHGV AICHIDTSAW SPSHGAFLAL
601: GSGPGQIEVC HWIFENDMTW NIID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)