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AT1G60280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 23
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 23 (NAC023); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 24 (TAIR:AT1G60350.1); Has 1617 Blast hits to 1595 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVMEeggNOG:ENOG41105SMEMBL:AC004473EMBL:BT030101EMBL:CP002684EnsemblPlants:AT1G60280EnsemblPlants:AT1G60280.1
entrez:842323GeneID:842323GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G60280.1hmmpanther:PTHR31124hmmpanther:PTHR31124:SF4HOGENOM:HOG000115140InterPro:IPR003441KEGG:ath:AT1G60280ncoils:Coil
OMA:TCIFANRPfam:PF02365Pfscan:PS51005PhylomeDB:O80751PIR:T02280PROSITE:PS51005Proteomes:UP000006548
RefSeq:NP_176234.1SMR:O80751STRING:3702.AT1G60280.1SUPFAM:SSF101941TAIR:AT1G60280tair10-symbols:ANAC023tair10-symbols:NAC023
UniGene:At.64873UniProt:O80751
Coordinates (TAIR10) chr1:-:22226885..22227928
Molecular Weight (calculated) 40573.60 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.58
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVEDEATYE LIKDELMKAE DEATYWLIKE ELIKAEDDVI ISRYLKRMIV NGDSWPDHFI EDVDVFNKNP NEEFHSQSPR FVIVKPRTEN CGRTDGCQSG
101: CWRIIGRDKL IKSKETGKIL GFKKILKFCL KKKPREYKRS WVMEEYRLNN NLNCKQDHVI CKIRFMFDAE ISFLLAKHFS CLSTRSPLPA NQLLPAYGVC
201: FFDSEAEGAF YLETIIGYDG NTWPSYVTND VYRLHPLTLV DPQDDKFKEF GTCIFANRTK TCGKTDECDG GGCWRIVEGH RVIKSKGKVL GYRRIFQFSE
301: NEEPRNVCEG EDPKKTAWFI EEYRPDENNK KDKVLCVIKF LIPLNQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)