suba logo
AT1G60200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); Has 135188 Blast hits to 78111 proteins in 2910 species: Archae - 381; Bacteria - 16050; Metazoa - 59921; Fungi - 15870; Plants - 11369; Viruses - 1556; Other Eukaryotes - 30041 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZRGAeggNOG:KOG2253EMBL:AY074284EMBL:BT001972EMBL:CP002684EnsemblPlants:AT1G60200EnsemblPlants:AT1G60200.1
entrez:842315Gene3D:1.20.1390.10Gene3D:3.30.70.330GeneID:842315GO:GO:0000166GO:GO:0003676GO:GO:0006397
Gramene:AT1G60200.1hmmpanther:PTHR18806hmmpanther:PTHR18806:SF4HOGENOM:HOG000084588InterPro:IPR000504InterPro:IPR002483InterPro:IPR012677
KEGG:ath:AT1G60200KO:K12822ncoils:CoilOMA:VFYEEDEPfam:PF00076Pfam:PF01480Pfscan:PS50102
Pfscan:PS51025PhylomeDB:Q8VY15PROSITE:PS50102PROSITE:PS51025Proteomes:UP000006548RefSeq:NP_176226.3SMART:SM00311
SMART:SM00360SMR:Q8VY15STRING:3702.AT1G60200.1SUPFAM:0048205SUPFAM:SSF101233SUPFAM:SSF54928TAIR:AT1G60200
UniGene:At.25089UniProt:Q8VY15
Coordinates (TAIR10) chr1:-:22200882..22205241
Molecular Weight (calculated) 101503.00 Da
IEP (calculated) 5.43
GRAVY (calculated) -1.07
Length 899 amino acids
Sequence (TAIR10)
(BLAST)
001: MADESSSPAT GDPNSQKPES TTPISIPNPN PNPSLTPPPP QQHSQPPVAP LVPPGPPYAP PAQIPSSLLP TNLPPPPPFR PGMQFTPVAN FQNPSSGVPP
101: PGSMPQYQPQ PGMRPFQPMA NGYPGIHGVA PPGAMPPHGL LRYPSPYPTM VRPGFIMRPP GTIGAVQLAP RPLIPGMPGL RPVMPPMVRP ASLPFVTPAE
201: KPQTTIYIGK IATVENDFMM SILEFCGHVK SCLRAEDPTT KKPKGFGFYE FESAEGILRA IRLLTQRTID GQELLVNVNQ ATKEYLLKYV EKKIETAKKA
301: KESQGTKENQ AEGPESEQDK LESADNETGK DGESKIKENI DIANSAVLTD EEREADREAM EKIETAIEER LKSNPLPPPP PPPADGSGME FAFKSKDGDS
401: NTDVARSDAA ANDVETSGEH NRPDTSSPDW SKRNDRRSRE RGEKEQEMDR YEREAERERS RKEREQRRKL EDAERAYQTR LRQWERRERE KEKERQYEKE
501: KEKEKERKRK KEIRYEEEEE EDDDDSRRRW HRAALDERRR RQLREKEDDL ADRLKEEEEV AEAKRSAEEQ NLQQQQLDAL RILSGQAAIG SETVQTSPIE
601: NDHKATLQTV GESANEHHAA DFEENGSGNE SMAIDNNSGS EAHAPSKKLG FGLVGSGKRT SVPSVFYEED EDEARKAKKM KPLVPIDYST EEQEAVAHGG
701: SGNTPPHLAL AAEFAKRISS TNPKEETIET EKQRSRRSHD KASHRDRERE RERDRDRDRV RDRGDGHSGP TKDAKESGKA KIIDTKFLDA KQLIDTIPKT
801: KEDLFSYEIN WAMYDKHQVH ERMRPWISKK IMEFLGEEEA TLVDFIVSNT QQHVQASQML ELLQSILDEE AEMFVLKMWR MLIFEIKRVE AGVPVKSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)