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AT1G60190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 18 (TAIR:AT1G10560.1); Has 2852 Blast hits to 2737 proteins in 198 species: Archae - 2; Bacteria - 22; Metazoa - 274; Fungi - 109; Plants - 2200; Viruses - 3; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410ITM9eggNOG:ENOG410YCUSEMBL:AC004473EMBL:CP002684EnsemblPlants:AT1G60190EnsemblPlants:AT1G60190.1
entrez:842314Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:842314Genevisible:O80742GO:GO:0004842GO:GO:0008270
GO:GO:0010029GO:GO:0016874Gramene:AT1G60190.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF116HOGENOM:HOG000238412InParanoid:O80742
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024iPTMnet:O80742KEGG:ath:AT1G60190
OMA:KHRCAVDPaxDb:O80742Pfam:O80742Pfam:PF00514Pfam:PF04564Pfscan:PS50176Pfscan:PS51698
PhylomeDB:O80742PIR:T02271PRIDE:O80742PRO:PR:O80742PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:O80742
Proteomes:UP000006548RefSeq:NP_176225.1SMART:SM00185SMART:SM00504SMR:O80742STRING:3702.AT1G60190.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT1G60190UniGene:At.66059UniPathway:UPA00143UniProt:O80742
Coordinates (TAIR10) chr1:+:22198403..22200463
Molecular Weight (calculated) 76018.30 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.07
Length 686 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)