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AT1G60080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3'-5'-exoribonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1508 Blast hits to 1508 proteins in 331 species: Archae - 402; Bacteria - 40; Metazoa - 363; Fungi - 232; Plants - 181; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1896-MONOMEReggNOG:COG2123eggNOG:KOG1613EMBL:AC005966EMBL:AK227971EMBL:BT004614EMBL:CP002684
EnsemblPlants:AT1G60080EnsemblPlants:AT1G60080.1entrez:842303GeneID:842303GO:GO:0005829Gramene:AT1G60080.1hmmpanther:PTHR11097
hmmpanther:PTHR11097:SF9HOGENOM:HOG000229504IntAct:Q9ZUI4InterPro:IPR001247InterPro:IPR015847InterPro:IPR020568InterPro:IPR033196
KEGG:ath:AT1G60080KO:K12586OMA:AKLQDCIPANTHER:PTHR11097:SF9Pfam:PF01138Pfam:PF03725PhylomeDB:Q9ZUI4
PIR:D96625Proteomes:UP000006548Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_176216.1SMR:Q9ZUI4STRING:3702.AT1G60080.1
SUPFAM:SSF54211SUPFAM:SSF55666TAIR:AT1G60080UniGene:At.36723UniProt:Q9ZUI4
Coordinates (TAIR10) chr1:-:22152605..22154339
Molecular Weight (calculated) 32700.60 Da
IEP (calculated) 4.70
GRAVY (calculated) 0.05
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)