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AT1G60060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.927
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serine/threonine-protein kinase WNK (With No Lysine)-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serine/threonine-protein kinase WNK (With No Lysine)-related; BEST Arabidopsis thaliana protein match is: Serine/threonine-protein kinase WNK (With No Lysine)-related (TAIR:AT5G53900.2); Has 3565 Blast hits to 2565 proteins in 80 species: Archae - 0; Bacteria - 3; Metazoa - 15; Fungi - 88; Plants - 227; Viruses - 0; Other Eukaryotes - 3232 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IP86eggNOG:ENOG4111GDAEMBL:AB493511EMBL:AC005966EMBL:AY084785EMBL:CP002684EnsemblPlants:AT1G60060
EnsemblPlants:AT1G60060.1entrez:842300GeneID:842300GO:GO:0016301Gramene:AT1G60060.1hmmpanther:PTHR13902hmmpanther:PTHR13902:SF23
HOGENOM:HOG000239475InterPro:IPR025610KEGG:ath:AT1G60060OMA:WHFPGVAPfam:PF14215PhylomeDB:Q9ZUI7PIR:A96625
Proteomes:UP000006548RefSeq:NP_564753.1TAIR:AT1G60060UniGene:At.36728UniProt:Q9ZUI7
Coordinates (TAIR10) chr1:+:22139282..22141585
Molecular Weight (calculated) 43521.40 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.65
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEHLNPLAV THLLQHTLRS LCIHENSQWV YAVFWRILPR NYPPPKWDGQ GAYDRSRGNR RNWILVWEDG FCNFAASAAE MSSGEGSGGG GGSAAYGNSD
101: FQQYQGLQPE LFFKMSHEIY NYGEGLIGKV AADHSHKWIY KEPNDQEINF LSAWHNSADS YPRTWEAQFQ SGIKTIALIS VREGVVQLGA VHKVIEDLSY
201: VVMLRKKLSY IESIPGVLLP HPSSSGYPFI NASPSDTWHF PGVAPPHQQP EHQFYHSDHN HRFLIGHHNQ PQAVGGAAPP LPLSMKITPS MSSLEALLSK
301: LPSVVPPATQ PGYYPFHHSA KEEMSQEEQN DAFRVERNDL VGEGSNNHNH NNNYNSNNDI YNYSNNCSNN NYDRENKIGG FLSEDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)