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AT1G60040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 49
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 49 (AGL49); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, male gametophyte, pedicel, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 50 (TAIR:AT1G59810.1); Has 193 Blast hits to 193 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC005966EMBL:CP002684EnsemblPlants:AT1G60040EnsemblPlants:AT1G60040.1entrez:842298
GeneID:842298GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT1G60040.1hmmpanther:PTHR11945
HOGENOM:HOG000153854IntAct:Q9ZUI9InterPro:IPR002100KEGG:ath:AT1G60040OMA:LRGSHETPaxDb:Q9ZUI9Pfam:PF00319
Pfscan:PS50066PhylomeDB:Q9ZUI9PIR:G96624PROSITE:PS50066ProteinModelPortal:Q9ZUI9Proteomes:UP000006548RefSeq:NP_176212.1
STRING:3702.AT1G60040.1SUPFAM:SSF55455TAIR:AT1G60040tair10-symbols:AGL49UniGene:At.64872UniProt:Q9ZUI9
Coordinates (TAIR10) chr1:-:22119075..22119929
Molecular Weight (calculated) 32160.70 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.70
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRQKKPNK SDDDDGDLHR KKQSFFKQRF PGFKKKASEL SVLCGNSVGF ICYGPDNDLH VWPQSQDHNP QALHEIVAKF NALSDERRKN HACDLNDFPH
101: HLKGLSREEL RKHLLHLDSQ LLGVREQKIE ILKKTLTGSS EKDGARVSEN SAISDHKLKI EPNLTDILSE DHLIRVSDKK LGSCDVFDEL AYVVRGSRNL
201: NENVSNYESK DAAYTGMDHL GTFGGNYLQE AAAELYQTYN LGNFCDDHVW DLEFASRLPP LHTFSDPLMT TNTCQTMSSD MISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)