AT1G60000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 32490 Blast hits to 20923 proteins in 885 species: Archae - 20; Bacteria - 3265; Metazoa - 15733; Fungi - 4094; Plants - 5788; Viruses - 0; Other Eukaryotes - 3590 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22093678..22094540 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28499.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.18 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 258 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASSVLLSC FKSHHQPNLL HGCNYSSNQT LLRFNFSTPK PLLISSRSCS RRFRVLSETI TVKLEEEEKD DGASAVLDPP AAVNTKLYFG NLPYNVDSAT 101: LAQIIQDFAN PELVEVLYNR DTGQSRGFAF VTMSNVEDCN IIIDNLDGTE YLGRALKVNF ADKPKPNKEP LYPETEHKLF VGNLSWTVTS ESLAGAFREC 201: GDVVGARVVF DGDTGRSRGY GFVCYSSKAE METALESLDG FELEGRAIRV NLAQGKKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)