suba logo
AT1G59990.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 57869 Blast hits to 34290 proteins in 2955 species: Archae - 517; Bacteria - 30307; Metazoa - 8550; Fungi - 6961; Plants - 3872; Viruses - 6; Other Eukaryotes - 7656 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2214-MONOMERBioGrid:27518EC:3.6.4.13eggNOG:ENOG410XNVGeggNOG:KOG0333EMBL:AC005966EMBL:AF424570
EMBL:AJ010471EMBL:AY142022EMBL:CP002684EMBL:Y11190EnsemblPlants:AT1G59990EnsemblPlants:AT1G59990.1entrez:842293
Gene3D:3.40.50.300GeneID:842293Genevisible:Q944S1GO:GO:0003723GO:GO:0004004GO:GO:0005524GO:GO:0009507
GO:GO:0010501Gramene:AT1G59990.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF210HOGENOM:HOG000265669InParanoid:Q944S1InterPro:IPR001650
InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT1G59990OMA:VIRLIHMPaxDb:Q944S1
Pfam:PF00270Pfam:PF00271Pfam:Q944S1Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q944S1
PIR:B96624PIR:T51346PRIDE:Q944S1PRO:PR:Q944S1PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q944S1Proteomes:UP000006548RefSeq:NP_176207.1SMART:SM00487SMART:SM00490SMR:Q944S1STRING:3702.AT1G59990.1
SUPFAM:SSF52540TAIR:AT1G59990UniGene:At.48UniProt:Q944S1
Coordinates (TAIR10) chr1:-:22090369..22092885
Molecular Weight (calculated) 64750.90 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.31
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)