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AT1G59980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.536
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARG1-like 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARG1-like 2 (ARL2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, leaf whorl, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 1 (TAIR:AT1G24120.1); Has 25507 Blast hits to 25492 proteins in 3344 species: Archae - 188; Bacteria - 10073; Metazoa - 4427; Fungi - 2514; Plants - 2606; Viruses - 73; Other Eukaryotes - 5626 (source: NCBI BLink).
Protein Annotations
BioGrid:27517eggNOG:COG0484eggNOG:KOG0713EMBL:AC005966EMBL:AK118901EMBL:AY226826EMBL:BT005502
EMBL:CP002684EnsemblPlants:AT1G59980EnsemblPlants:AT1G59980.1entrez:842292Gene3D:1.10.287.110GeneID:842292Genevisible:Q6XL73
GO:GO:0016020Gramene:AT1G59980.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF242HOGENOM:HOG000241767InParanoid:Q6XL73IntAct:Q6XL73
InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT1G59980OMA:EKESMARPaxDb:Q6XL73Pfam:PF00226Pfam:Q6XL73
Pfscan:PS50076PhylomeDB:Q6XL73PIR:A96624PRIDE:Q6XL73PRINTS:PR00625PRO:PR:Q6XL73PROSITE:PS00636
PROSITE:PS50076ProteinModelPortal:Q6XL73Proteomes:UP000006548RefSeq:NP_176206.2scanprosite:PS00636SMART:SM00271SMR:Q6XL73
STRING:3702.AT1G59980.1SUPFAM:SSF46565TAIR:AT1G59980tair10-symbols:ARL2tair10-symbols:ATDJC39UniGene:At.36742UniProt:Q6XL73
Coordinates (TAIR10) chr1:+:22081069..22083491
Molecular Weight (calculated) 46787.10 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.59
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MATHSSRSEN KDAGEEDELR RRNPYEVLGI PSNSTDQEIK SAYRRMALRY HPDKNPDDPV AAEMFKEVTF AYEVLSDPEN RRLYDTTGSE AVGPENEDLE
101: LDLSSLGAVN TIFAALFNKL GVQIKTTVSA NLLGEALNGT VTTLPLMVGQ VVSRKVEKQS AHFYSVTLTE EEAQDGLICK VHSSAKNKFK LLYFDQVENG
201: GLSLALQEDS RKTGKLSTAG LYFFGFPVYR FDHRVNSRAL SRDPETGFFK RLDAFQPFEI TELKAGSHVF AVYGDNFFKS VSYTLEIFSS APFGNEKESL
301: RSTEAQIVSK RTELLKFEAE YHEVFAQFTE MASKCTGEVQ EIDELLKRRN EICAAYTIFP PTKQGSSKSR SWSKKKSSLL MEPREEGEVA VREEGGVKKK
401: KWYNIQLRQD KKKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)