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AT1G59660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleoporin autopeptidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 64429 Blast hits to 28580 proteins in 1811 species: Archae - 118; Bacteria - 17184; Metazoa - 18465; Fungi - 12106; Plants - 2886; Viruses - 648; Other Eukaryotes - 13022 (source: NCBI BLink).
Protein Annotations
BioGrid:27481eggNOG:ENOG410ZIT9eggNOG:KOG0845EMBL:AC009317EMBL:CP002684EnsemblPlants:AT1G59660EnsemblPlants:AT1G59660.1
entrez:842256Gene3D:3.30.1610.10GeneID:842256Genevisible:F4ID16GO:GO:0005635GO:GO:0005643GO:GO:0015031
GO:GO:0051028Gramene:AT1G59660.1hmmpanther:PTHR23198hmmpanther:PTHR23198:SF4InterPro:IPR007230KEGG:ath:AT1G59660KO:K14297
MEROPS:S59.A03OMA:NQPKPFGPaxDb:F4ID16Pfam:F4ID16Pfam:PF04096Pfscan:PS51434PIR:C96620
PRIDE:F4ID16PRO:PR:F4ID16PROSITE:PS51434ProteinModelPortal:F4ID16Proteomes:UP000006548RefSeq:NP_176175.1SMR:F4ID16
STRING:3702.AT1G59660.1SUPFAM:0040175SUPFAM:SSF82215TAIR:AT1G59660UniGene:At.36814UniProt:F4ID16
Coordinates (TAIR10) chr1:+:21924693..21929233
Molecular Weight (calculated) 103377.00 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.53
Length 997 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGSSNNNPF GQSSISSPFG TQTHSLFGQT NNNASNNPFA TKPFGTSTPF GAQTGSSMFG GTSTGVFGAP QTSSPFGASP QAFGSSTQAF GASSTPSFGS
101: SNSPFGGTST FGQKSFGLST PQSSPFGSTT QQSQPAFGNS TFGSSTPFGA STTPAFGASS TPAFGVSNTS GFGATNTPGF GATNTTGFGG SSTPGFGASS
201: TPAFGSTNTP AFGASSTPLF GSSSSPAFGA SPAPAFGSSG NAFGNNTFSS GGAFGSSSTP TFGASNTSAF GASSSPSFNF GSSPAFGQST SAFGSSSFGS
301: TQSSLGSTPS PFGAQGAQAS TSTFGGQSTI GGQQGGSRVI PYAPTTDTAS GTESKSERLQ SISAMPAHKG KNMEELRWED YQRGDKGGQR STGQSPEGAG
401: FGVTNSQPSI FSTSPAFSQT PVNPTNPFSQ TTPTSNTNFS PSFSQPTTPS FGQPTTPSFR STVSNTTSVF GSSSSLTTNT SQPLGSSIFG STPAHGSTPG
501: FSIGGFNNSQ SSPLFGSNPS FAQNTTPAFS QTSPLFGQNT TPALGQSSSV FGQNTNPALV QSNTFSTPST GFGNTFSSSS SLTTSISPFG QITPAVTPFQ
601: SAQPTQPLGA FGFNNFGQTQ IANTTDIAGA MGTFSQGNFK QQPALGNSAV MQPTPVTNPF GTLPALPQIS IAQGGNSPSI QYGISSMPVV DKPAPVRVSP
701: LLTSRHLLQR RVRLPTRKYR PSDDGPKVPF FSDEEENSST PKADAFFIPR ENPRALFIRP VERVKSEHPK DSPTPLQENG KRSNGVTNGA NHETKDNGAI
801: REAPPVKVNQ KQNGTHENHG GDKNGSHSSP SGADIESLMP KLHHSEYFTE PRIQELAAKE RVEQGYCKRV KDFVVGRHGY GSIKFLGETD VCRLDLEMVV
901: QFKNREVNVY MDESKKPPVG QGLNKPAVVT LLNIKCMDKK TGTQVMEGER LDKYKEMLKR KAGEQGAQFV SYDPVNGEWT FKVEHFSSYK LGDEYDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)