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AT1G59520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CW7
Curator
Summary (TAIR10)
Encodes CW7.
Computational
Description (TAIR10)
CW7; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2045 (InterPro:IPR019141); Has 144 Blast hits to 143 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
DNASU:842242eggNOG:ENOG410ZRJNeggNOG:KOG2465EMBL:AB028226EMBL:AK227804EMBL:BT004825EMBL:CP002684
EnsemblPlants:AT1G59520EnsemblPlants:AT1G59520.1entrez:842242ExpressionAtlas:Q9SLU1GeneID:842242Gramene:AT1G59520.1hmmpanther:PTHR21477
hmmpanther:PTHR21477:SF13HOGENOM:HOG000071023IntAct:Q9SLU1InterPro:IPR019141KEGG:ath:AT1G59520OMA:MLPLKCCPfam:PF09741
PhylomeDB:Q9SLU1PIR:T52433Proteomes:UP000006548RefSeq:NP_564743.1STRING:3702.AT1G59520.1TAIR:AT1G59520tair10-symbols:CW7
UniGene:At.26672UniProt:Q9SLU1
Coordinates (TAIR10) chr1:+:21861589..21866016
Molecular Weight (calculated) 42991.90 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.25
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNDGEVTPS RHEILSMVKK HSKSLGKTSL DEQDASDVEM DSNFWHGVFD VYFVRCMESR RRQDDDLLFF VRKLSCKSYG LTENEDAPAP YFVRRWAPKL
101: DELLGESLAE VDWRKSFYLN MIAHTSFTVT VAICSNEALK TYQGSKDTKL SPIYKVVKTV YASPSRVNFH LDSKKEVETT PAYPEICFAV DDFDSTFDAV
201: VLTDKDHCYC VLLNSHDGAA FPSATVKDSS DSNTNADPRT VKDPKVTLFS GFVSYQMVRE AYEGGRNRFG SLLSLGHITG KADRLYMRGP GGRGEVEVAV
301: SGVVDQSQVV LGPVSPMSSK KSIDLGSIFR KAASVASVAA KHAIAAATAS YDEDEMFPLK CCLMSISLPW DTIAHDLLFK ATPPVNME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)