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AT1G58430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase family protein
Curator
Summary (TAIR10)
Encodes an anther-specific proline-rich protein.
Computational
Description (TAIR10)
RXF26; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT2G24560.1); Has 3551 Blast hits to 3513 proteins in 245 species: Archae - 0; Bacteria - 416; Metazoa - 0; Fungi - 15; Plants - 3100; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G58430-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKTYEMBL:AB008020EMBL:AB077822EMBL:AC082643
EMBL:AY087373EMBL:CP002684EnsemblPlants:AT1G58430EnsemblPlants:AT1G58430.1entrez:842212Gene3D:3.40.50.1110GeneID:842212
Genevisible:Q9C648GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT1G58430.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF152
HOGENOM:HOG000237650InParanoid:Q9C648InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G58430OMA:DIMTGVNPaxDb:Q9C648
Pfam:PF00657Pfam:Q9C648Pfscan:PS51257PhylomeDB:Q9C648PIR:B96618PIR:T52463PRIDE:Q9C648
PRO:PR:Q9C648ProteinModelPortal:Q9C648Proteomes:UP000006548RefSeq:NP_176139.1STRING:3702.AT1G58430.1SUPFAM:SSF52266TAIR:AT1G58430
tair10-symbols:RXF26UniGene:At.442UniProt:Q9C648
Coordinates (TAIR10) chr1:-:21711684..21712992
Molecular Weight (calculated) 40404.70 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.15
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MWTSKTISFT LFITTTLLGS CNASAKAKTQ PLFPAILIFG DSTVDTGNNN YPSQTIFRAK HVPYGIDLPN HSPNGRFSNG KIFSDIIATK LNIKQFVPPF
101: LQPNLTDQEI VTGVCFASAG AGYDDQTSLT TQAIRVSEQP NMFKSYIARL KSIVGDKKAM KIINNALVVV SAGPNDFILN YYEVPSWRRM YPSISDYQDF
201: VLSRLNNFVK ELYSLGCRKI LVGGLPPMGC LPIQMTAQFR NVLRFCLEQE NRDSVLYNQK LQKLLPQTQA SLTGSKILYS DVYDPMMEML QNPSKYGFKE
301: TTRGCCGTGF LETSFMCNAY SSMCQNRSEF LFFDSIHPSE ATYNYIGNVL DTKIRGWLKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)