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AT1G58360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : amino acid permease 1
Curator
Summary (TAIR10)
Encodes AAP1 (amino acid permease 1), a neutral amino acid transporter expressed in seeds. Functions in amino acid uptake into embryos.
Computational
Description (TAIR10)
amino acid permease 1 (AAP1); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: neutral amino acid transport, amino acid import, response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 8 (TAIR:AT1G10010.1); Has 2298 Blast hits to 2282 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 417; Plants - 1313; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G58360-MONOMEReggNOG:COG0814eggNOG:KOG1303EMBL:AB077822EMBL:AC008051EMBL:AF031649EMBL:CP002684
EMBL:L16240EMBL:X67124EnsemblPlants:AT1G58360EnsemblPlants:AT1G58360.1entrez:842205GeneID:842205Genevisible:Q42400
GO:GO:0005313GO:GO:0005886GO:GO:0006868GO:GO:0009624GO:GO:0015171GO:GO:0015180GO:GO:0015186
GO:GO:0015193GO:GO:0015194GO:GO:0015293GO:GO:0015808GO:GO:0015825GO:GO:0016021GO:GO:0035524
GO:GO:0043090GO:GO:0098712Gramene:AT1G58360.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF278HOGENOM:HOG000238530InParanoid:Q42400
InterPro:IPR013057KEGG:ath:AT1G58360OMA:SFLSIMAPaxDb:Q42400Pfam:PF01490Pfam:Q42400PhylomeDB:Q42400
PIR:A48187PRIDE:Q42400PRO:PR:Q42400ProteinModelPortal:Q42400Proteomes:UP000006548RefSeq:NP_176132.1SABIO-RK:Q42400
STRING:3702.AT1G58360.1TAIR:AT1G58360tair10-symbols:AAP1tair10-symbols:NAT2TCDB:2.A.18.2.1TMHMM:TMhelixUniGene:At.101
UniGene:At.75637UniProt:Q42400
Coordinates (TAIR10) chr1:+:21676623..21680313
Molecular Weight (calculated) 52898.30 Da
IEP (calculated) 8.96
GRAVY (calculated) 0.42
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFNTEGHN HSTAESGDAY TVSDPTKNVD EDGREKRTGT WLTASAHIIT AVIGSGVLSL AWAIAQLGWI AGTSILLIFS FITYFTSTML ADCYRAPDPV
101: TGKRNYTYMD VVRSYLGGRK VQLCGVAQYG NLIGVTVGYT ITASISLVAV GKSNCFHDKG HTADCTISNY PYMAVFGIIQ VILSQIPNFH KLSFLSIMAA
201: VMSFTYATIG IGLAIATVAG GKVGKTSMTG TAVGVDVTAA QKIWRSFQAV GDIAFAYAYA TVLIEIQDTL RSSPAENKAM KRASLVGVST TTFFYILCGC
301: IGYAAFGNNA PGDFLTDFGF FEPFWLIDFA NACIAVHLIG AYQVFAQPIF QFVEKKCNRN YPDNKFITSE YSVNVPFLGK FNISLFRLVW RTAYVVITTV
401: VAMIFPFFNA ILGLIGAASF WPLTVYFPVE MHIAQTKIKK YSARWIALKT MCYVCLIVSL LAAAGSIAGL ISSVKTYKPF RTMHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)