AT1G58250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.923 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SABRE (SAB); INVOLVED IN: response to ethylene stimulus, multidimensional cell growth, cell growth; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (TAIR:AT5G49680.2); Has 229 Blast hits to 173 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 17; Plants - 79; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:21587317..21601373 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 293371.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2607 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASPAKFFF GFLIVSIVLW MIFILCSRLF AWMLSRVLGA SVVFRVGGWK CLKDVVVKFK KGAIESVSAS EIKLSLRQSL VKLGVGFLSR DPKVQVLISD 0101: LEVVMRSSTS TTNLQKAKSH KPRTSGRGKW MVVANVARFL SVSVADMVVK TTKVIVEVKE LKLDINKDGG TKPNLYVKLN VLPILVHLCE SRIISDQSSN 0201: VSFECCPASQ ASSASPDRSA ATLFCDELSL SSEFGHDRAV GIVVRNVEVT SGDVILNFDE DSFPKSKQSS ASLRSDEVRT SATAASSAKK PHKEHQLVAA 0301: LAKYSSSFPE KVSFSLPKLD VRCVNREHDL LAENNITGIQ LRSVKSKSFE DTGESTRLDV QMELSEIHVF READSSILEI MKVDVVSFIY IPVQPVLPIR 0401: AEVDIKLGGT RCNLFISRLQ PWLRLHFLKK KKLVLQEKTH NLEKTKAADM KAIMWTGTVS APEMTVMLYG TEDIPLYHFC SQSSHVFANN VSSLGTAVHV 0501: ELGELNLHLA DEYQECFREH LFGIEPNSGS LMHIAKVSLD WGRRDRTSSD EVGFRSKLVL SVDVTGMGIY FSFKRVQSLI INALSFKALF KTLSVTGKKM 0601: NKTVSVQPSK GSGKGTRLVN INLERCCVNF CDDTGLDNTV IDDPKSVNYG SQGGRVSFSS LADGTPRTAS ILSTAPEACK RLKYSVSLEI SQFSFCLNKD 0701: KLSTQMELGR AKSIYQEYLE EHTPCSNVIL FDMHNAKLVR RSGGLNEIDV CSLFSATHIS LGWEPDVHLS FYELFLRLRS LVYAQRHKEP ESGCNKGISS 0801: VKDGGPSEKI NQSNSVNKQK KKESMFAIDV ETLTISAEVG DGVEVKLEAQ SIFSENACIG VLLEGLMLAF NGSRVFKTTR MQVSRIPTAT NLSDAVPVMT 0901: DGPWDWVVQG LDVHICMPYK LQLRAIDDSI EEMLRGLKLI SVAKGKHILS GKRESSKPKK SSPKFGRIKF CIRRLTADIE EEPIQGWLDE HYQLVKKEAC 1001: ELAVRLKFLE DLIHKAGQSP KGAETSAVLD ERKMFFDGVE IDVEDPVAIN KVKEEIHKRS FQSYYQACQG LAPSEGSGAC REGFQAGFKP SAARTSLLSV 1101: CATDFDLSLT AVHGGDAGLI EVLKKLDPIC EENDIPFSRL YGSNVYLNTG SLVVQLRNYT LPLLSGTSGK CEGRIVLAQQ ATCFQPQISQ DVFVGRWRKV 1201: KMFRSASGTT PPLKTYSDLR IHFEQGEVSF GVGYEPAFAD ISYAFTVALR RANLSHRNPD MVQVIKKERS LPWWDDMRNY VHGNITLSFS ESKWSVLATT 1301: DPYESLDQLQ IVSGPIELKQ SDGRVFVSAK DFKIKLSSLE SLISRHSLKV PVRASGAAFI EAPDFNLEVT MDWDCESGNS LNHYLYAFPA EGKPREKVFD 1401: PFRSTSLSLR WNFSLRPEKF HQSPSSTEHP TDVGTVYSSQ DKPDSIPLAS PTMNLGAHDL AWILKFWGLN YYPPHKLRSF SRWPRFGVPR AARSGNLSLD 1501: KVMTEFMLRV DATPSLIKYM PWDSDDPAKG LTFNMAKLKY ELCYSRGKQK YTFECKRDAL DLVYQGLDLH VPKAFINKDE HPCIPGSVQV LRKSTQDALI 1601: DRVPSGKDHK RYEKHRDEGF LLSSDYFTIR RQAPKADPER LLAWQEAGRR NLEMTYVRSE FENGSESDEH IRSDPSDDDG YNVVIADNCQ RVFVYGLKLL 1701: WTIENRDAVW SFVGGISKAF EPPKPSPSRQ YTQRKIHEEN QKESCPETHQ GEMSRSSASP GRNLPSSPSH SIKIEKSDDI GTVETIESEE EGTRHFMVNV 1801: IEPQFNLHSE EANGRFLLAA VSGRVLARSF HSIMRVGVEV IEQALGTGSV KIPECSPEMT WTRMEVSVML EHVQAHVAPT DVDPGAGLQW LPKIRRNSPK 1901: VKRTGALLER VFMPCDMYFR YTRHKGGTPD LKVKPLKELT FNSHNIIATM TSRQFQVMLD VLTNLLFARL PKPRKSSLQC PTEDEDVEEE ADEVVPYGVE 2001: EVELAKINLE EKERERKLLL DDIRKLSPCS DNMDDTHIER EGELWMISTR RSILVQGLKK ELTYAQKSRK AASASLRMAL QKAAQLRIME KEKNKSPSYA 2101: MCISLQINKV VWSMLVDGKS FAEAEINDMI YDFDRDYKDI GVARFTTKYF VVRNCLPNAK SDMLLSAWNP PPEWGKKVML RVDAKQGAPK DAHYPLELFH 2201: VEIYPLRIHL TETMYRMMWE YFFPEEEQDS QSRQEVWKIS TTAGSKRVKK GLVGHESSGH AIKDVEASRM SSSALSASAA VQSQSNDDSV QKSNVICLRS 2301: STGASAQELR RTSSFDREEN VAEPIANELV LQAHSCNVSS SIEQQEDFSK QKVKEIKPVK SGRSSHEEKK AGKSHEEKKS RPRKMMEFHN IKISQVELLV 2401: TYEGSRFVVN DLKLLMDTFH RVEFTGTWRR LFSRVKKHII WGVLKSVTGM QGKKFKDKSH NNRESTDNDL NLSDNDQTGK PDQQQVTWFK RQSDGAGDGF 2501: VTSIRGLFNT QRRKAKAFVL RTMRGEAEND FHGDWSDSDV EFSPFARQLT ITKAKRLIRR HTKKFRPRSQ RGSTSQQRES LPSSPIETTP FESGYSSGSS 2601: PYEDFRE |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)