AT1G58230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.2); Has 12369 Blast hits to 8547 proteins in 474 species: Archae - 22; Bacteria - 2638; Metazoa - 4211; Fungi - 2289; Plants - 1295; Viruses - 0; Other Eukaryotes - 1914 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21566331..21578865 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 292795.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2604 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESDSVAGSA SSSDAAASHL PSVSVLLDAL EQSASTPRIA NGLSQRLLRS LQFSNENKLS FKALNGACRV LRLACIQAKE SRKSGCVSPL VESSDCGVIV 0101: DSPHKKSDSS HTEDCWFECV ESCVGIFTEF FSSTNDAKVY VLRSSVCVDC LFELFWEKAV RNNVMKLIID LMKIRPLCEE DKSAKLQVCS KYLETFTQVK 0201: ERENDSVDLS VDLLAGMRDL IKSDSRYYQA LFREGECFLH IVSLLNGNLD EANGEKLVLN VLQTLTSLLA NNDTSKFAFK ALAGKGYQTL QSLLLDFFQW 0301: KPTQRLLDAL LDMLVDGKFD DKGSALIKNE DVIILYLNVL QKSSESLQCY GLNLFQQLLR DSISNRASCV RAGMLHLLLD WFSLENDDSV ILKITQLTQT 0401: IGGHSISGKD IRKIFALLRS ERVGNQQRYR SLLLACLLSM LNEKGPTGFF DMNGVESGIV IRTPVQWPAN KGFSFCCWLR VESFPGDGKM GIFSFMSKNG 0501: KGCFAALGKD GLSYVSLNLK RQCVNVHTNL VCKKWHFICV SHSIGRAFWG GSLLRCYVNG DLVSSERCSY PKVTDVLTSC LIGTRITLPH IQDNDGLESI 0601: RDVFPFFGQI GPVYLFNDSL SSEQVQAIYS LGPSYMYAFL ENEMTCPFSD NPFPSGILDG KDGLASKVSF GLNAQASDGR RLFNVSRVSD HLQERLAFEA 0701: DIMVGTQLCS RRLLQQIIYC VGGISVFFPL ITQSDRCESE TLNEETSAMP TKERMTAEVI ELIASVLDEN PANQQQMHLL AGFPILGFLL QSIQPKQLNL 0801: ETLSSLKHLF NVISSSGFAE QLVEDAISSI FLNPHIWLHA AYNVQRELYM FLIQQLDNDP RLLGSLCRLP RVIDIVWNFY WESERYCKGS KPLMHPTRTI 0901: AERPSRDEIH KIRLLLLSLG EMSLRHNISS GDVKALTAFF ETCQDVACIE DVLHMVIRAI SQTSVLVSFL EQVNLIGGCH IFVDLLQRDY EPIRLLSLQF 1001: LGRLLYDVPS ERKGPKFFNL AVGRTKSLSQ GHKKIGARTQ PIFLAMSDRL FQYPQTDNLR ATLFDVLLGG ASPKQVLQKH NQVDKHRSKP SNSHFFLPQI 1101: FVFIFEFLSG CKDGLARMKI ISDILDLLDS NPMNVEALME FGWSAWLTAS MKLDVIKDYR SELLNHDDLA LNEQHFVRGL FCVVLCHYIL SVKGGWQQLE 1201: ETVNFILLQS EHNDVPYRSF LRDLYEDLIQ RLVELSSEDN IFLSHPCRDN VLYLLRLVDE MLVREFGSRL LFPAISTDFS EDLLQLGNRE DPTLGLDESF 1301: QRFLTEEISR NTECQQSCTT VTELMTNERW WNLYDNLWKI ICDINGRGPV KMSPKSLATG PSIGQRARGL VESLNVPAAE MAAVVVSGGI GSALSGKMNK 1401: NVDKAMLLRG EKCPRIVFRL VTLYLCMSSL EKATRCVQQV TSLLPSFLAA DDEQSKSRLH LFIGCLLYVR SQYGKLDDGA RFHVISHLIR ETVSCGKSIL 1501: ATSGMNKDDS SDSGGIFKEM GSIQNLIHKD RVLAAVTDET TYMKTLISDR TRQVQALGER NNETLSIECN SKKAFDGELQ NVLKTVVTWD ENRRVSVQLS 1601: HEEQQQNVTE KWIHMLRSLM DERGPWSATP FPNNILNRWK LDRTEDSWRR RPKLRRNYHF DERLCHPPST STATENETSN VINESKSGVI HIPEQMKKFL 1701: LKGIRRITDE GGSDSCENDS SQAEQSFMDT SADIQFSELV RTSSGLKDVV QDKVDASSLE VGTSEVLTSV PCVLVTPKRK LAGWLAVMKN VLHFSGEFLV 1801: EGTGGSAVFK NFSTSKGSDV TKAENKQNLV KWSSPYDSET FLDLESGNKN KKPLKKVKRH RRWKIGKVKS VHWTRYLLQY TALEIFFQES VPPVFLNFAS 1901: QKNAKEVGML IVSTRNEFLF PKNVPRDRTA MISFVDRRIA MEMAETARDR WRRREITNFE YLMILNTLAG RSYNDLTQYP VFPWVVADYS SETLDFSKAS 2001: TFRDLSKPVG ALDTRRFEIF EDRYHSFSDP DIPSFYYGSH YSSMGSVLYY LLRLEPFTSL HRSLQGGKFD HADRLFQSVE GSFRNCLSNT SDVKELIPEF 2101: FYMPEFLVNS NSYHLGVKQD GEPLGEVCLP PWAKGSPEMF IARNREALES EYVSSHLHDW IDLIFGHKQR GKPAVEAANI FYYLTYEGAV DVENMEDQLQ 2201: ISAIEDQIAN FGQTPIQIFR KKHPRRGPPI PIAHPLYFAP ASINLSSILP ATTHSPSAVL YVGVVDSNIV LVNQGLTLSV KIWLTTQLHS GGNFTFSSAQ 2301: DPFFGVGSDV LSPRNIGSPL ADNVELGSQC FAAMQMPLEN FLVSCGNWEN SFHVISLTDG RVVQSIRHHK DVVSCVAVTA DSTILATGSY DTTVMVWDIL 2401: RMRTPEKRVR NTHAEVLRKD IVIADAPSHI LCGHDDIITC LYVSTDLDIV ISGSKDGTCV FHTLREGRYI RSLKHPSGSA VSKLAASHHG RIVLYGDDDL 2501: SLHLYSINGK HLASSESNGR INCLELSKCG EFLVSAGDQG QIIVRSMNTL EVVKRYNGAG KIITSLTVTQ EECFLAGTKD GALLVYSIEN PQHRKPSPIW 2601: SIKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)